Scaffold Ga0214921_10004135

Overview

Basic Information

• Taxon OID: 3300023174
• Scaffold ID: Ga0214921_10004135
• Source Dataset Name: Freshwater microbial communities from Lake Lanier, Atlanta, Georgia, United States - LL-1505
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 21650
• Total Scaffold Genes: 27
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 20 (74.07%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (33.33%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Lanier, Atlanta, Georgia, United States

Source Dataset Sampling Location

• Location Name: USA: Georgia
• Coordinates
  • Lat. (^o): 34.2611
  • Long. (^o): -83.95
  • Depth (m): 2

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000332	Metagenome / Metatranscriptome	1283	Y
F002933	Metagenome / Metatranscriptome	519	Y
F005294	Metagenome	405	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0214921_1000413511	F002933	N/A	MITPLHKWYPMLGVADYPTKTDALERRAERLEEEYKQALKMKKVKDKIDDLEFELYVKKAERNQLSLEIFTNRKIDILV
Ga0214921_1000413512	F000332	N/A	MRWLILLILLLGLVGAVAKNGCHVREFYGIAYIVHDPTERHTKMMEWLSVNAAYCKASDYVVIWNNLSEWAGSADSTWIRAKVVHGYKDALDREKK
Ga0214921_100041354	F005294	GAG	MATASPSPNVALIYDPRYHDFVSWASLMCELYGTQNLEIPTDSTNWQEWASGLKAIDVFTNEGIPGPFIFDDWHEWAEALVNAVNPAVS