Scaffold Ga0214921_10003667

Overview

Basic Information

• Taxon OID: 3300023174
• Scaffold ID: Ga0214921_10003667
• Source Dataset Name: Freshwater microbial communities from Lake Lanier, Atlanta, Georgia, United States - LL-1505
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 23315
• Total Scaffold Genes: 43
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 29 (67.44%)
• Novel Protein Genes: 7
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (57.14%)
• Associated Families: 7

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Lanier, Atlanta, Georgia, United States

Source Dataset Sampling Location

• Location Name: USA: Georgia
• Coordinates
  • Lat. (^o): 34.2611
  • Long. (^o): -83.95
  • Depth (m): 2

Associated Families

Family	Category	Number of Sequences	3D Structure?
F009954	Metagenome / Metatranscriptome	310	Y
F016152	Metagenome / Metatranscriptome	249	Y
F040102	Metagenome	162	Y
F062764	Metagenome	130	Y
F080056	Metagenome	115	Y
F086829	Metagenome	110	Y
F090303	Metagenome	108	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0214921_1000366710	F016152	N/A	MISVETGLSPVDLLDAPDGVLESIVIYLKEKQKNASR
Ga0214921_1000366723	F086829	AGGAG	MATKKVAVKTVKDQLLAAGASYLRASAAAVLAMYMAGITDPKVLANAFAAGLLGPLVKALQPNEKEFGIKK
Ga0214921_1000366724	F080056	N/A	MNEYREGFTDGYIFAKEELVERLFEVEGLDDWTVDQICDLIEKNKL
Ga0214921_1000366728	F090303	AGGA	MGRFRKEKKMGSNINWIDERSPFKKEKDYIDSRNTTNGWKTIINRDNFINCNACTRRIRVNQKMLWHVESDLKMHQPKDCKLW
Ga0214921_1000366729	F062764	N/A	MKVKKMKKAYEPVIVKTFWNKHTAKELNAMSDEQVMQLIDSHVERFMDSWQKRNKGKDFPDLAKGTIADVRNKRTNVSKAPRIIEK
Ga0214921_1000366739	F040102	AGG	MQCAVCKFNVESGQICKKCYSSLKSALTELPELQQGAASFVTPGRSGSGSPSTERSIGFNVNALDYSMGKELLGVLHKYEAVIRRGRSLTPPALLKREATVDLEVAATVSFHLAHLEWTVQQDWVEEFAGLIKELHSKGMATNKKFIEQPRRIPCPTDECKANIVIDIENLLAGVRCHKCRTSWTLYRLLGLAMNNPNRTFWLDIDAICLWMNITKIDINKIVREHQIPMKNGLYDISAIAKARSLV
Ga0214921_100036679	F009954	AGG	MDGLQIKAKTTDGVEAIYSLRPRSIVAFEQKFGKGFAKLLSEDQKLEHIYFLAWSAMKDSGKVVKPWGDTFLDTLDSVELVVDPNLESTETA