Scaffold Ga0214921_10003540

Overview

Basic Information

• Taxon OID: 3300023174
• Scaffold ID: Ga0214921_10003540
• Source Dataset Name: Freshwater microbial communities from Lake Lanier, Atlanta, Georgia, United States - LL-1505
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 23767
• Total Scaffold Genes: 60
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 51 (85.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Lanier, Atlanta, Georgia, United States

Source Dataset Sampling Location

• Location Name: USA: Georgia
• Coordinates
  • Lat. (^o): 34.2611
  • Long. (^o): -83.95
  • Depth (m): 2

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001176	Metagenome / Metatranscriptome	756	Y
F010085	Metagenome / Metatranscriptome	308	Y
F038669	Metagenome / Metatranscriptome	165	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0214921_100035403	F010085	AGGAG	LGKIQTVSRYIALSEEGLVPRLECPMDQGLLMPNITLDDKEFLYCLSCNYQNFIGIKFYEDILEKIKVAENV
Ga0214921_1000354035	F038669	GGAGG	MSIFQGLDPHLQKLVNMGETGTDIMHGHMKNLMYETEQELLDTSELQDMPKYKYLSGRLDALTEIYVMTYNLSFAINERAKQNG
Ga0214921_1000354045	F001176	GAG	MSDNGTGMASPAVNAPSGAVTSEEATRKNPKQGGFRSGFKTDRPATKIDRNKHGIRRETNLAPKKTGRPKKV