NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
x
This website uses cookies to improve user experience. By using NMPFamDB you consent to all cookies in accordance with our privacy policy. OK
Scaffold Ga0214921_10003540

Scaffold Ga0214921_10003540


Overview

Basic Information
Taxon OID3300023174 Open in IMG/M
Scaffold IDGa0214921_10003540 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Lanier, Atlanta, Georgia, United States - LL-1505
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)23767
Total Scaffold Genes60 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)51 (85.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (100.00%)
Associated Families3

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Lanier, Atlanta, Georgia, United States

Source Dataset Sampling Location
Location NameUSA: Georgia
CoordinatesLat. (o)34.2611Long. (o)-83.95Alt. (m)Depth (m)2
Location on Map
Zoom:    Powered by OpenStreetMap ©

Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F001176Metagenome / Metatranscriptome756Y
F010085Metagenome / Metatranscriptome308Y
F038669Metagenome / Metatranscriptome165Y

Sequences

Protein IDFamilyRBSSequence
Ga0214921_100035403F010085AGGAGLGKIQTVSRYIALSEEGLVPRLECPMDQGLLMPNITLDDKEFLYCLSCNYQNFIGIKFYEDILEKIKVAENV
Ga0214921_1000354035F038669GGAGGMSIFQGLDPHLQKLVNMGETGTDIMHGHMKNLMYETEQELLDTSELQDMPKYKYLSGRLDALTEIYVMTYNLSFAINERAKQNG
Ga0214921_1000354045F001176GAGMSDNGTGMASPAVNAPSGAVTSEEATRKNPKQGGFRSGFKTDRPATKIDRNKHGIRRETNLAPKKTGRPKKV

 ⦗Top⦘



© Pavlopoulos Lab, Bioinformatics & Integrative Biology | B.S.R.C. "Alexander Fleming" | Privacy Notice
Make sure JavaScript is enabled in your browser settings to achieve functionality.