Basic Information | |
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Taxon OID | 3300023174 Open in IMG/M |
Scaffold ID | Ga0214921_10003328 Open in IMG/M |
Source Dataset Name | Freshwater microbial communities from Lake Lanier, Atlanta, Georgia, United States - LL-1505 |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | DOE Joint Genome Institute (JGI) |
Sequencing Status | Permanent Draft |
Scaffold Components | |
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Scaffold Length (bps) | 24755 |
Total Scaffold Genes | 39 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 32 (82.05%) |
Novel Protein Genes | 5 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 2 (40.00%) |
Associated Families | 5 |
Taxonomy | |
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All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage | (Source: UniRef50) |
Source Dataset Ecosystem |
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Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Lanier, Atlanta, Georgia, United States |
Source Dataset Sampling Location | ||||||||
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Location Name | USA: Georgia | |||||||
Coordinates | Lat. (o) | 34.2611 | Long. (o) | -83.95 | Alt. (m) | Depth (m) | 2 | Location on Map |
Zoom: | Powered by OpenStreetMap © |
Family | Category | Number of Sequences | 3D Structure? |
---|---|---|---|
F015731 | Metagenome / Metatranscriptome | 252 | Y |
F016152 | Metagenome / Metatranscriptome | 249 | Y |
F021112 | Metagenome | 220 | Y |
F028173 | Metagenome / Metatranscriptome | 192 | Y |
F045100 | Metagenome / Metatranscriptome | 153 | Y |
Protein ID | Family | RBS | Sequence |
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Ga0214921_1000332815 | F021112 | N/A | MAGDYITPGRSGSGTVSAERSIGVNVNALDYSMAIELLGILHSWESEIRSARQLTPPALLKKEPTTDMEVQVACDFQLAHLEWTLNQEWAADFYNEIKEQHAKGMAAAKQFVEQPRRIPCPTDECGRYVVIDAENLMADVSCFGCKQSWTVLRLVALAMSNPNRKFFLDVEAIALWLGISQRQVHKIIKANGIAKNGKMYDLAAVIANR |
Ga0214921_1000332829 | F045100 | AGGAG | MSYTVTSDNFEAKKKGEAITEKELLELGLNADALVAGDHLKSNVPTKPATVEEAK |
Ga0214921_1000332833 | F016152 | N/A | LAAISVETGISPIDLMDAPDGILEAMIIFLKERNKARSK |
Ga0214921_1000332834 | F028173 | GGAG | MAQEVIVLSGIKETLDALKEFDKDVVKRFNKVINTELAGAERDAKGLIDEDPPMSGWRKADAAKGRTRGGEGWPGWNASEIKSKITKTKAQGKVRKGDYTTSAGALLNKSAAGSIFEVAGRKTKPGSGGGSSAQFLRTISNRFGAASRVVWRVVDKDKDRIQANVAKALDDAKKELQTHLNKERA |
Ga0214921_100033284 | F015731 | N/A | MGVNMSVENEIGVVDFDANTAAWLEQYKSAVAKIKELQEVADVARAHIEAALGDNQMGMFLNRPVVRWSFVESTRFDTKRAREILPAQVIEALEVKSSSRRFSIVNEDD |
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