NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
x
This website uses cookies to improve user experience. By using NMPFamDB you consent to all cookies in accordance with our privacy policy. OK
Scaffold Ga0214921_10003328

Scaffold Ga0214921_10003328


Overview

Basic Information
Taxon OID3300023174 Open in IMG/M
Scaffold IDGa0214921_10003328 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Lanier, Atlanta, Georgia, United States - LL-1505
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)24755
Total Scaffold Genes39 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)32 (82.05%)
Novel Protein Genes5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (40.00%)
Associated Families5

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Lanier, Atlanta, Georgia, United States

Source Dataset Sampling Location
Location NameUSA: Georgia
CoordinatesLat. (o)34.2611Long. (o)-83.95Alt. (m)Depth (m)2
Location on Map
Zoom:    Powered by OpenStreetMap ©

Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F015731Metagenome / Metatranscriptome252Y
F016152Metagenome / Metatranscriptome249Y
F021112Metagenome220Y
F028173Metagenome / Metatranscriptome192Y
F045100Metagenome / Metatranscriptome153Y

Sequences

Protein IDFamilyRBSSequence
Ga0214921_1000332815F021112N/AMAGDYITPGRSGSGTVSAERSIGVNVNALDYSMAIELLGILHSWESEIRSARQLTPPALLKKEPTTDMEVQVACDFQLAHLEWTLNQEWAADFYNEIKEQHAKGMAAAKQFVEQPRRIPCPTDECGRYVVIDAENLMADVSCFGCKQSWTVLRLVALAMSNPNRKFFLDVEAIALWLGISQRQVHKIIKANGIAKNGKMYDLAAVIANR
Ga0214921_1000332829F045100AGGAGMSYTVTSDNFEAKKKGEAITEKELLELGLNADALVAGDHLKSNVPTKPATVEEAK
Ga0214921_1000332833F016152N/ALAAISVETGISPIDLMDAPDGILEAMIIFLKERNKARSK
Ga0214921_1000332834F028173GGAGMAQEVIVLSGIKETLDALKEFDKDVVKRFNKVINTELAGAERDAKGLIDEDPPMSGWRKADAAKGRTRGGEGWPGWNASEIKSKITKTKAQGKVRKGDYTTSAGALLNKSAAGSIFEVAGRKTKPGSGGGSSAQFLRTISNRFGAASRVVWRVVDKDKDRIQANVAKALDDAKKELQTHLNKERA
Ga0214921_100033284F015731N/AMGVNMSVENEIGVVDFDANTAAWLEQYKSAVAKIKELQEVADVARAHIEAALGDNQMGMFLNRPVVRWSFVESTRFDTKRAREILPAQVIEALEVKSSSRRFSIVNEDD
 ⦗Top⦘



Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
© Pavlopoulos Lab, Bioinformatics & Integrative Biology | B.S.R.C. "Alexander Fleming" | Privacy Notice
Make sure JavaScript is enabled in your browser settings to achieve functionality.