NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
x
This website uses cookies to improve user experience. By using NMPFamDB you consent to all cookies in accordance with our privacy policy. OK
Scaffold Ga0214921_10003014

Scaffold Ga0214921_10003014


Overview

Basic Information
Taxon OID3300023174 Open in IMG/M
Scaffold IDGa0214921_10003014 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Lanier, Atlanta, Georgia, United States - LL-1505
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)26485
Total Scaffold Genes83 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)29 (34.94%)
Novel Protein Genes16 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (12.50%)
Associated Families16

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Lanier, Atlanta, Georgia, United States

Source Dataset Sampling Location
Location NameUSA: Georgia
CoordinatesLat. (o)34.2611Long. (o)-83.95Alt. (m)Depth (m)2
Location on Map
Zoom:    Powered by OpenStreetMap ©

Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F010897Metagenome / Metatranscriptome297Y
F011914Metagenome / Metatranscriptome285Y
F024040Metagenome / Metatranscriptome207Y
F026210Metagenome / Metatranscriptome198Y
F030670Metagenome / Metatranscriptome184Y
F032536Metagenome / Metatranscriptome179Y
F032572Metagenome / Metatranscriptome179N
F035215Metagenome / Metatranscriptome172N
F048101Metagenome / Metatranscriptome148N
F048123Metagenome / Metatranscriptome148Y
F049419Metagenome / Metatranscriptome146Y
F062446Metagenome / Metatranscriptome130Y
F066486Metagenome / Metatranscriptome126Y
F071966Metagenome121Y
F082109Metagenome / Metatranscriptome113Y
F104482Metagenome / Metatranscriptome100N

Sequences

Protein IDFamilyRBSSequence
Ga0214921_1000301416F010897N/AMKLINTTSYCSEKLKEIIKWCMPDGVFLKDIRKIDFGNTKLGWHGRAWGSMRLHVGVPVYKKYIKPYKSGGFRGYLEVNTYTWEESLIELIAHELRHLYQYKKNKFFHGIKKIRKYNMGTRAKLCEVDASLYAKRKVREYRKSNFKLNLV
Ga0214921_1000301417F035215N/AMSKQKRRTKMKSSEQIAKEISDRIVEYKALMVEHDNNQSAVDELESAIHELDHLLRWINE
Ga0214921_1000301421F032572N/AMTTYKYIADYINKPTIFCYILDRVVNNNPYLFTGEYNKKLINKKVWMAKQVFPHCEPTQYTYFKTFKEAKDALNRWGAKWERV
Ga0214921_1000301428F011914GAGMITDNQIKALDENELGYLYYCLNSEWDSLNMGYDFNWYILRAFRNNTIQKILNKYSGNLTDENKNLIMQILTKLETNK
Ga0214921_1000301433F071966N/AMSLLGINFDIQGHIFKPFYLILGALYFIVLLSLLGALYIVLYIRNTLEITLKDIQKNRKKYSRLK
Ga0214921_1000301434F026210GGAGMSPILGANPLDYDAKYPQSVDNSVNDDAKIFVMERNEGREVMFQIEDGTQYYGRIGYVPNSEHYCVVVDRNGTPWEWYVREEALRFVEDIGTKIG
Ga0214921_1000301437F066486N/AMKNKTISKNDPYHLKVGKFKKKNVFDTQVDMGDRMKDFFLGLGRRVITEDEFINIGFNYALIKGLGEIKNKKK
Ga0214921_1000301439F048101N/AMKMKKFKNIKEFLETCSEDEKEYVYDLYNNASVADLIDLLFEHLPADDTIQEIQEYREEMEWDNNEAKKSNKLNRKCDCDFVGCQGC
Ga0214921_1000301442F062446N/AMKSKTIRIIGFILYCLFWMAMAYLFIGCSSVSQVGKNEGWFPNGMSEDAQDYPTKYNTMDSPDGRRNPNAQVRIFGATY
Ga0214921_1000301443F082109N/AMWTPIEIFCLTFLFNHSPMANERLLVKEVIENREAQLLIESVSLRNEIQNN
Ga0214921_1000301453F049419N/AMKLPKLDLLDLVTTYIFFGLVYGTIITLTWNYLFESVTLVHLSILQGFGIHLIARILFGNTNTNYVSNFYTPKAPDLDKIDSYLKEMQEDLDKQADEVERQYEDLDKKD
Ga0214921_1000301465F030670N/AMKVIRYIKQLEDEFGNDLELWGAYEETRKDNYPNVDFIDAKLLKTFPSPYHARNWMENDCKRIN
Ga0214921_1000301468F048123N/AMKPRYDLTKGKLISYDGEIIEFAGSAVVDKYSDQVQEIMDLFDFKKGEYLVTDESSIGDFEKQNMNPKKLQKFKKKYGFSLTNSSNISKIAERMYNFRPF
Ga0214921_1000301471F104482N/AMKKKKKRMTSEEFEKAMKAQGRFVSKVYYRIRYKDMGLYILNSFQFKLLPKFFYMNGKYFTECGFNWLGWIFEFQWNR
Ga0214921_1000301473F032536N/AMSERKTFEELMRSFRFHKNPIINWFLGEVNYYSHTYLNVKWGLKNKLQKLIRGYSDSDCWNLPQSTAKFMLPRIKHLRQNYHSLANRHHLIIDNKIVPYVGKEDDFVFNTTLGCHIDKTTGLEISLDQKEYEYILDEIIFALQTIVDEDDINVSLEEVYEVYPKGFDPIKDRQMFLEKQEDGTYLVEFERKENIQPDYSKLNKAYERQRNGLMLLGLYFKDLWD
Ga0214921_1000301475F024040N/AMNVYVTGHNWLAKVDLEDSIKKSDRYTEATTRAIESVLDQEEKDGVELKIQDYDDFGLGIITLTYDEKDIKNEGEHRVMLTSNILANAGRWEQYKFLKDYEEKCKEEGL

 ⦗Top⦘



© Pavlopoulos Lab, Bioinformatics & Integrative Biology | B.S.R.C. "Alexander Fleming" | Privacy Notice
Make sure JavaScript is enabled in your browser settings to achieve functionality.