Scaffold Ga0214921_10003014

Overview

Basic Information

• Taxon OID: 3300023174
• Scaffold ID: Ga0214921_10003014
• Source Dataset Name: Freshwater microbial communities from Lake Lanier, Atlanta, Georgia, United States - LL-1505
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 26485
• Total Scaffold Genes: 83
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 29 (34.94%)
• Novel Protein Genes: 16
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (12.50%)
• Associated Families: 16

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Lanier, Atlanta, Georgia, United States

Source Dataset Sampling Location

• Location Name: USA: Georgia
• Coordinates
  • Lat. (^o): 34.2611
  • Long. (^o): -83.95
  • Depth (m): 2

Associated Families

Family	Category	Number of Sequences	3D Structure?
F010897	Metagenome / Metatranscriptome	297	Y
F011914	Metagenome / Metatranscriptome	285	Y
F024040	Metagenome / Metatranscriptome	207	Y
F026210	Metagenome / Metatranscriptome	198	Y
F030670	Metagenome / Metatranscriptome	184	Y
F032536	Metagenome / Metatranscriptome	179	Y
F032572	Metagenome / Metatranscriptome	179	N
F035215	Metagenome / Metatranscriptome	172	N
F048101	Metagenome / Metatranscriptome	148	N
F048123	Metagenome / Metatranscriptome	148	Y
F049419	Metagenome / Metatranscriptome	146	Y
F062446	Metagenome / Metatranscriptome	130	Y
F066486	Metagenome / Metatranscriptome	126	Y
F071966	Metagenome	121	Y
F082109	Metagenome / Metatranscriptome	113	Y
F104482	Metagenome / Metatranscriptome	100	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0214921_1000301416	F010897	N/A	MKLINTTSYCSEKLKEIIKWCMPDGVFLKDIRKIDFGNTKLGWHGRAWGSMRLHVGVPVYKKYIKPYKSGGFRGYLEVNTYTWEESLIELIAHELRHLYQYKKNKFFHGIKKIRKYNMGTRAKLCEVDASLYAKRKVREYRKSNFKLNLV
Ga0214921_1000301417	F035215	N/A	MSKQKRRTKMKSSEQIAKEISDRIVEYKALMVEHDNNQSAVDELESAIHELDHLLRWINE
Ga0214921_1000301421	F032572	N/A	MTTYKYIADYINKPTIFCYILDRVVNNNPYLFTGEYNKKLINKKVWMAKQVFPHCEPTQYTYFKTFKEAKDALNRWGAKWERV
Ga0214921_1000301428	F011914	GAG	MITDNQIKALDENELGYLYYCLNSEWDSLNMGYDFNWYILRAFRNNTIQKILNKYSGNLTDENKNLIMQILTKLETNK
Ga0214921_1000301433	F071966	N/A	MSLLGINFDIQGHIFKPFYLILGALYFIVLLSLLGALYIVLYIRNTLEITLKDIQKNRKKYSRLK
Ga0214921_1000301434	F026210	GGAG	MSPILGANPLDYDAKYPQSVDNSVNDDAKIFVMERNEGREVMFQIEDGTQYYGRIGYVPNSEHYCVVVDRNGTPWEWYVREEALRFVEDIGTKIG
Ga0214921_1000301437	F066486	N/A	MKNKTISKNDPYHLKVGKFKKKNVFDTQVDMGDRMKDFFLGLGRRVITEDEFINIGFNYALIKGLGEIKNKKK
Ga0214921_1000301439	F048101	N/A	MKMKKFKNIKEFLETCSEDEKEYVYDLYNNASVADLIDLLFEHLPADDTIQEIQEYREEMEWDNNEAKKSNKLNRKCDCDFVGCQGC
Ga0214921_1000301442	F062446	N/A	MKSKTIRIIGFILYCLFWMAMAYLFIGCSSVSQVGKNEGWFPNGMSEDAQDYPTKYNTMDSPDGRRNPNAQVRIFGATY
Ga0214921_1000301443	F082109	N/A	MWTPIEIFCLTFLFNHSPMANERLLVKEVIENREAQLLIESVSLRNEIQNN
Ga0214921_1000301453	F049419	N/A	MKLPKLDLLDLVTTYIFFGLVYGTIITLTWNYLFESVTLVHLSILQGFGIHLIARILFGNTNTNYVSNFYTPKAPDLDKIDSYLKEMQEDLDKQADEVERQYEDLDKKD
Ga0214921_1000301465	F030670	N/A	MKVIRYIKQLEDEFGNDLELWGAYEETRKDNYPNVDFIDAKLLKTFPSPYHARNWMENDCKRIN
Ga0214921_1000301468	F048123	N/A	MKPRYDLTKGKLISYDGEIIEFAGSAVVDKYSDQVQEIMDLFDFKKGEYLVTDESSIGDFEKQNMNPKKLQKFKKKYGFSLTNSSNISKIAERMYNFRPF
Ga0214921_1000301471	F104482	N/A	MKKKKKRMTSEEFEKAMKAQGRFVSKVYYRIRYKDMGLYILNSFQFKLLPKFFYMNGKYFTECGFNWLGWIFEFQWNR
Ga0214921_1000301473	F032536	N/A	MSERKTFEELMRSFRFHKNPIINWFLGEVNYYSHTYLNVKWGLKNKLQKLIRGYSDSDCWNLPQSTAKFMLPRIKHLRQNYHSLANRHHLIIDNKIVPYVGKEDDFVFNTTLGCHIDKTTGLEISLDQKEYEYILDEIIFALQTIVDEDDINVSLEEVYEVYPKGFDPIKDRQMFLEKQEDGTYLVEFERKENIQPDYSKLNKAYERQRNGLMLLGLYFKDLWD
Ga0214921_1000301475	F024040	N/A	MNVYVTGHNWLAKVDLEDSIKKSDRYTEATTRAIESVLDQEEKDGVELKIQDYDDFGLGIITLTYDEKDIKNEGEHRVMLTSNILANAGRWEQYKFLKDYEEKCKEEGL