Scaffold Ga0214921_10002892

Overview

Basic Information

• Taxon OID: 3300023174
• Scaffold ID: Ga0214921_10002892
• Source Dataset Name: Freshwater microbial communities from Lake Lanier, Atlanta, Georgia, United States - LL-1505
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 27103
• Total Scaffold Genes: 51
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 33 (64.71%)
• Novel Protein Genes: 9
• Novel Protein Genes with Ribosome Binding Sites (RBS): 5 (55.56%)
• Associated Families: 9

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Lanier, Atlanta, Georgia, United States

Source Dataset Sampling Location

• Location Name: USA: Georgia
• Coordinates
  • Lat. (^o): 34.2611
  • Long. (^o): -83.95
  • Depth (m): 2

Associated Families

Family	Category	Number of Sequences	3D Structure?
F005584	Metagenome	395	Y
F007164	Metagenome / Metatranscriptome	356	Y
F008938	Metagenome	325	Y
F014488	Metagenome	262	Y
F019102	Metagenome	231	Y
F019290	Metagenome	230	Y
F023585	Metagenome	209	Y
F025225	Metagenome	202	Y
F025739	Metagenome / Metatranscriptome	200	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0214921_1000289213	F019290	N/A	MMEAFWGTTNIKVASAVATYGGKLRSIDGVTTQVYEDGRRQTTFWFQADGAGTMARDEMQCPWAEMKSDIESPIRYIRAALENRETLLGLVKNKVEPIRIIQRGNQTLLIPENAKPELKKAILKHL
Ga0214921_1000289214	F019102	N/A	MSISLEEELNSSFVAPEREFMGERLAPYTEGSRLLLLQVRDDNDSSIYFIWAFIYMHIQIAKNRRDAIKLAWDKDLFREKIIEYIEGKNESDRDSATKIVSSMVDEAQKGRVEVIQTHGLPDSGNA
Ga0214921_1000289215	F025225	N/A	MLTISLLNQAKFVHKLQQYQQVSRKNMADVINSKLGDVAVTAIGTTYRTNTAQIASELQRIQTTTKMKKVFKPIGLDAKGRLRKRKIGQHLVKESKSVAYEGTYRLVNWLLKNRGLPTLGKTKLGLGGLGMGTKPGTIGALARRLVAGRKRSVNYIRNGWAAAAAIFGKRASLSRGDYSKAAIMRLGGGSKADSNKARMEGIIFNRAGDKDTRYYPVRKRSVSGAVKVGLPGLLEAIDKVMKDMAVYLAKKDKESSDKLRL
Ga0214921_1000289222	F025739	GGA	MNKSLIGVLSVMRRWMLGFIVGSCLTGCATTQPYDIGQAPNQDSISDFIQRWDKLDRTHATKDEYRELYAQTLKALSRSMEETERCRTRFEEQ
Ga0214921_1000289236	F023585	AGGA	MSVKRLLLVDEFHRVVSKRLKELFKDFDHAKRENYKDIVNHLDYSHRITKELLERAKKYQKRDLEAKKK
Ga0214921_1000289243	F014488	GAG	MKHQGQDPADSILASYTPDMAEAIDTLEDRVKERLAQMKAMNPTIDLNQLAKLTAEVVEQTIKCEGDSQMLRNKRDDTLDEALLALATNRSPDSLTAIAKRYINPTTGKPYTRAAISARLSELTQRTGLVLRIQRSERVRQIYKERALRVHKKRREECPKWNKDAWIKGIKSRKAK
Ga0214921_1000289245	F007164	AGGAG	MSEKQIGMELKKTAALLEKAKAQAVQTMAETISLAADCGDILLSARKEELDIDAILEIAEINGEMGRRLERVAKARPSLQAPAPGQLKQLALWAGILPDPIETSTQKPEQAWHNYIIKARQWLARKSVSQWTPAQRTQFIEEARPIVEAYREAGGDE
Ga0214921_1000289247	F008938	GGA	MSRLVKRGMPLTSEADAHRWRLANQKRVSRVQPILPPSSTLSETSENSDSESLKSENSLGRLIRAKRAELVAYSLVARASRDGNPVAMRAAIAGWGEAKKRASEAEMEHAQYEEATRAVIRMDEVREVFGKWLGSIRNLMDAMPASLSARANPSDPECAKQAIQEGIDQIFVTIQKAEGAFK
Ga0214921_100028927	F005584	N/A	MSGTIDTTYFSTDLTYMIGDLWASVTGLGSSAVSASVTDLGTAQELDIGGDVIRITQSLVVKASAISAPAIGQLCSVSGVERMIAGFTKAADDVSYTIELADITT