NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0214921_10002892

Scaffold Ga0214921_10002892


Overview

Basic Information
Taxon OID3300023174 Open in IMG/M
Scaffold IDGa0214921_10002892 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Lanier, Atlanta, Georgia, United States - LL-1505
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)27103
Total Scaffold Genes51 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)33 (64.71%)
Novel Protein Genes9 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)5 (55.56%)
Associated Families9

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Lanier, Atlanta, Georgia, United States

Source Dataset Sampling Location
Location NameUSA: Georgia
CoordinatesLat. (o)34.2611Long. (o)-83.95Alt. (m)Depth (m)2
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F005584Metagenome395Y
F007164Metagenome / Metatranscriptome356Y
F008938Metagenome325Y
F014488Metagenome262Y
F019102Metagenome231Y
F019290Metagenome230Y
F023585Metagenome209Y
F025225Metagenome202Y
F025739Metagenome / Metatranscriptome200Y

Sequences

Protein IDFamilyRBSSequence
Ga0214921_1000289213F019290N/AMMEAFWGTTNIKVASAVATYGGKLRSIDGVTTQVYEDGRRQTTFWFQADGAGTMARDEMQCPWAEMKSDIESPIRYIRAALENRETLLGLVKNKVEPIRIIQRGNQTLLIPENAKPELKKAILKHL
Ga0214921_1000289214F019102N/AMSISLEEELNSSFVAPEREFMGERLAPYTEGSRLLLLQVRDDNDSSIYFIWAFIYMHIQIAKNRRDAIKLAWDKDLFREKIIEYIEGKNESDRDSATKIVSSMVDEAQKGRVEVIQTHGLPDSGNA
Ga0214921_1000289215F025225N/AMLTISLLNQAKFVHKLQQYQQVSRKNMADVINSKLGDVAVTAIGTTYRTNTAQIASELQRIQTTTKMKKVFKPIGLDAKGRLRKRKIGQHLVKESKSVAYEGTYRLVNWLLKNRGLPTLGKTKLGLGGLGMGTKPGTIGALARRLVAGRKRSVNYIRNGWAAAAAIFGKRASLSRGDYSKAAIMRLGGGSKADSNKARMEGIIFNRAGDKDTRYYPVRKRSVSGAVKVGLPGLLEAIDKVMKDMAVYLAKKDKESSDKLRL
Ga0214921_1000289222F025739GGAMNKSLIGVLSVMRRWMLGFIVGSCLTGCATTQPYDIGQAPNQDSISDFIQRWDKLDRTHATKDEYRELYAQTLKALSRSMEETERCRTRFEEQ
Ga0214921_1000289236F023585AGGAMSVKRLLLVDEFHRVVSKRLKELFKDFDHAKRENYKDIVNHLDYSHRITKELLERAKKYQKRDLEAKKK
Ga0214921_1000289243F014488GAGMKHQGQDPADSILASYTPDMAEAIDTLEDRVKERLAQMKAMNPTIDLNQLAKLTAEVVEQTIKCEGDSQMLRNKRDDTLDEALLALATNRSPDSLTAIAKRYINPTTGKPYTRAAISARLSELTQRTGLVLRIQRSERVRQIYKERALRVHKKRREECPKWNKDAWIKGIKSRKAK
Ga0214921_1000289245F007164AGGAGMSEKQIGMELKKTAALLEKAKAQAVQTMAETISLAADCGDILLSARKEELDIDAILEIAEINGEMGRRLERVAKARPSLQAPAPGQLKQLALWAGILPDPIETSTQKPEQAWHNYIIKARQWLARKSVSQWTPAQRTQFIEEARPIVEAYREAGGDE
Ga0214921_1000289247F008938GGAMSRLVKRGMPLTSEADAHRWRLANQKRVSRVQPILPPSSTLSETSENSDSESLKSENSLGRLIRAKRAELVAYSLVARASRDGNPVAMRAAIAGWGEAKKRASEAEMEHAQYEEATRAVIRMDEVREVFGKWLGSIRNLMDAMPASLSARANPSDPECAKQAIQEGIDQIFVTIQKAEGAFK
Ga0214921_100028927F005584N/AMSGTIDTTYFSTDLTYMIGDLWASVTGLGSSAVSASVTDLGTAQELDIGGDVIRITQSLVVKASAISAPAIGQLCSVSGVERMIAGFTKAADDVSYTIELADITT

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