Scaffold Ga0214921_10002541

Overview

Basic Information

• Taxon OID: 3300023174
• Scaffold ID: Ga0214921_10002541
• Source Dataset Name: Freshwater microbial communities from Lake Lanier, Atlanta, Georgia, United States - LL-1505
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 29500
• Total Scaffold Genes: 49
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 32 (65.31%)
• Novel Protein Genes: 10
• Novel Protein Genes with Ribosome Binding Sites (RBS): 6 (60.00%)
• Associated Families: 10

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Lanier, Atlanta, Georgia, United States

Source Dataset Sampling Location

• Location Name: USA: Georgia
• Coordinates
  • Lat. (^o): 34.2611
  • Long. (^o): -83.95
  • Depth (m): 2

Associated Families

Family	Category	Number of Sequences	3D Structure?
F006985	Metagenome / Metatranscriptome	360	Y
F011142	Metagenome / Metatranscriptome	294	Y
F013741	Metagenome / Metatranscriptome	268	Y
F019966	Metagenome	226	Y
F035668	Metagenome / Metatranscriptome	171	Y
F043286	Metagenome	156	Y
F064411	Metagenome	128	Y
F077013	Metagenome	117	Y
F102815	Metagenome / Metatranscriptome	101	Y
F104710	Metagenome	100	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0214921_1000254118	F064411	AGG	MKSVGNVLLRVLATFVASALGVIGAGSLGGVAPATAAAVGGILAVAKVIERLSLAFLEDGKLTQNEINAAFQQSVQLKNVKPEPDTK
Ga0214921_1000254120	F019966	AGGAG	MSDFDVSNEYKLQTLNTRLEQLNVEGWHNEEAKTVATALGNTEEVERLTANIEIIKTAIVAVKSQIADLA
Ga0214921_1000254123	F013741	N/A	MTDQKPTNQALLLQIVRDIEILKANSIQILEASRDHENRIRDLEKNMNRNAWIPSVITAVLTSLIVFWISKGLGQ
Ga0214921_1000254127	F077013	AGGA	MANEVIYDVKGLIKDLNALEPGLKKAMVKEAKAIAKPIASNIKNAIPSIAPLSGMLPQNNPTGRLAWGAGKKADSVSIRFRTGRSRVSAVTPLVAVWVTSPMTAIADTAGKGGMRKAKKVTSEYDYKNGRRRHQVTSQGRTMIANLKSRYANDFVYPAVEDSLDDAESKIKLVIDKYARMVNRKLD
Ga0214921_1000254137	F104710	AGG	MPITQAVYAVGTTLVQVVAPDTSPTKVTLHNLESVANRQIWIGGSGLVQGQSAHINSAVVLQLILDPGDSLFAVTTSGTYSLGVILQKQD
Ga0214921_1000254142	F006985	N/A	MIRETCSCGAEFETDDREAIELVKTWRRTHKHSDKPHKADSRDSSTLTNTDVALGFQAIYDPLDDDNE
Ga0214921_1000254149	F035668	N/A	VKIWSKDYRAGKMEGIRVEHTRTSDALIELERAKVISNAQMQAILDLILEKLTDVADID
Ga0214921_100025415	F102815	AGG	MRTPEELFLDAINTYKAWLAVGKDFLNHSDLFEIWDCAITAYAQSVFITRNRAVSHVLQGLEVMN
Ga0214921_100025418	F011142	AGGA	MAVVKVSGKVSKVFGASNQGLNLVESYKSATGEDYTRSYTVWFAVAHGVAEGAEVTVFGQLSTKIEDYEDRNGQAARKVKLDINNAQIDAPKPVEVSAPF
Ga0214921_100025419	F043286	N/A	VSSLGLRRLGLQDNQVECCKCGFRWAVNAEKRNRKDLLCVSCRVKPATTIQYGKLRCSPHVGAVDQFLNPVDEFGRLVLVGERVCGHRDCVNPSHIVAG