NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0214921_10002183

Scaffold Ga0214921_10002183


Overview

Basic Information
Taxon OID3300023174 Open in IMG/M
Scaffold IDGa0214921_10002183 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Lanier, Atlanta, Georgia, United States - LL-1505
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)32235
Total Scaffold Genes63 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)50 (79.37%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (100.00%)
Associated Families3

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Lanier, Atlanta, Georgia, United States

Source Dataset Sampling Location
Location NameUSA: Georgia
CoordinatesLat. (o)34.2611Long. (o)-83.95Alt. (m)Depth (m)2
Location on Map
Zoom:    Powered by OpenStreetMap ©

Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F040597Metagenome / Metatranscriptome161Y
F054848Metagenome / Metatranscriptome139Y
F097217Metagenome104N

Sequences

Protein IDFamilyRBSSequence
Ga0214921_1000218329F097217GGAMTSTAVRTTTTEIVVSHTVAHLDQSADAVIKEFAKAKEDIKVLEAKKKAAEEIIRQLLGDAKLGFIDGVKRVEIKDRTLTKVDRKILQAAYPEAYEASLVSTEYTIVDAE
Ga0214921_1000218338F040597GGAGGLSNSKLAAGIWEIKDVHTGERISKFRARKRADVDRMLQMASIGLKRPLSDFEAVYLTDWE
Ga0214921_1000218360F054848AGGAVSTITPTQAASLYTSGKSVVEVAQELGITYGKARKLIQESGTDIRNTSDRLKGKTRKAK

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