Scaffold Ga0214921_10002138

Overview

Basic Information

• Taxon OID: 3300023174
• Scaffold ID: Ga0214921_10002138
• Source Dataset Name: Freshwater microbial communities from Lake Lanier, Atlanta, Georgia, United States - LL-1505
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 32544
• Total Scaffold Genes: 55
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 50 (90.91%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (100.00%)
• Associated Families: 4

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Lanier, Atlanta, Georgia, United States

Source Dataset Sampling Location

• Location Name: USA: Georgia
• Coordinates
  • Lat. (^o): 34.2611
  • Long. (^o): -83.95
  • Depth (m): 2

Associated Families

Family	Category	Number of Sequences	3D Structure?
F025685	Metagenome	200	Y
F047462	Metagenome	149	Y
F062555	Metagenome	130	Y
F069826	Metagenome / Metatranscriptome	123	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0214921_1000213811	F062555	GAGG	MEQAMEIVDYAKPCMDAEKALKDAHNAVLENNFDAALAKTMDALVSVRLMQGALRHMKEQNG
Ga0214921_1000213816	F069826	AGGA	MTTGIEHLKPIPKRKGRGPSKKPALFATSLRLPRHVLDYFSTHHPYTKQAKIREILTEYVTNHQGASNGNI
Ga0214921_1000213826	F025685	AGGAG	MKYIADFFALVGLCSTIIVVGFYIGYTTYQPKCHTVASVLTKECK
Ga0214921_1000213842	F047462	AGGAG	MGNVKKQLYACRECGDDIEPRRVQLGYRLCLWCGEDAAQADRKSWTVVQEYNKGGYMFVTPTAAATTLKQTNPKEQRT