NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0214921_10001813

Scaffold Ga0214921_10001813


Overview

Basic Information
Taxon OID3300023174 Open in IMG/M
Scaffold IDGa0214921_10001813 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Lanier, Atlanta, Georgia, United States - LL-1505
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)35724
Total Scaffold Genes61 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)37 (60.66%)
Novel Protein Genes15 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)11 (73.33%)
Associated Families15

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Lanier, Atlanta, Georgia, United States

Source Dataset Sampling Location
Location NameUSA: Georgia
CoordinatesLat. (o)34.2611Long. (o)-83.95Alt. (m)Depth (m)2
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F003049Metagenome510Y
F005584Metagenome395Y
F005846Metagenome388Y
F007164Metagenome / Metatranscriptome356Y
F008741Metagenome328Y
F008938Metagenome325Y
F009142Metagenome322Y
F010463Metagenome303N
F011284Metagenome292N
F012433Metagenome / Metatranscriptome280N
F023059Metagenome211Y
F023833Metagenome208Y
F027777Metagenome / Metatranscriptome193N
F033350Metagenome177N
F100669Metagenome102Y

Sequences

Protein IDFamilyRBSSequence
Ga0214921_1000181311F008741GAGMSVKTIKYSQRLGDVLRCLPAAKHLADQGHEVFFDCFEQYHGVFDLVSYAKAGSKGDVLDLEIWPSRYNDFIKSRKTWHDFVYSHPEIKEADKTNIILDKLDDKPAEGLPETYNLVAPFGISQTFYRNPLTLIQDAVKELGKESVFVLCPPDIKIQGLNTYTAKSVEQMVKAIRGADQFWAVNSSPIIIASAVRRGKESRFWGEKNEAEVQNVFHFEGLTRMD
Ga0214921_1000181312F005584GAGGMAGSIPTSYFAMDLSNMIQDLYQSVTGLGSTSVSASVTDLTTASELEIGGEVFRVTQSLVVLASGISAPVIGSLCTVSGVERMIGGFSQSTDGLSFTIELAEITT
Ga0214921_1000181314F009142N/AMTNSVQINVEDALDNLLANIPNLNVYKTNRVGAKLFPSATISASVGGQLLGNYTGVYEVAVTIDYSDTAAKISQADFDAEYCSIFEAFYSETPPLFTKIQNNIVDTKVYTARITGQTPTIRTAKRAWQRGLNMSLICTPSETSDGLRSLNFFQTQNSMYVALI
Ga0214921_1000181317F012433GAGMSADQVADLRERLARIEERQVGLISILERHTSEIAEWTSRMNGKVDTLERDAHTIKTKLWLVALVSGAVFSTIWELIKVRVFPR
Ga0214921_1000181328F023059GGAMWEAILASLAGVIGIIAWWTKNRAKTRRERDDEEIAYNRRLRDSEVDSWIHRR
Ga0214921_1000181330F011284N/AMTLEQGVEKTQKHFTKKHELHLTTLQVAAVESMEKKYKRGVEEHGGTKLWEMPSVKLVENAIEEATDQLTYLLTLRSQMHIVLELARDGCTDETLTNPRARECCNLIYTTLTGQTKPPL
Ga0214921_1000181334F005846GAGMTSSPLPARPVASAVPASHKEFAKRTSIEGKLNGWCGWFDQETKQGYNRHGKFASNHNLMAERILGAGIKSRFVHCEIMGQRTKTGKGTIVVMDAFDPANPKPYAERMKEIEHLEAVTFDVPQNKLLRFVQLAHHKINAIWEEMNFQNNRAGEVIWEGFVMKATDDGKYPFITNPSYCSPAWQKQRIRW
Ga0214921_1000181337F027777AGGAMSEELPTFWYEEPANKKLPNETTDEWVVRLFGAFPDTEFDQRNDFRCLNLPTTAKENAEGFGIFDYGQDKQ
Ga0214921_1000181339F023833AGGAMKSHSELLQDIINDAMRKAAVLERERCAELVQRLADGTEDQVIQDILNEVVVALRRLSDE
Ga0214921_1000181340F033350GGAGGMSVDVDVPRVKWSMLEWKTMEEKPKNDEKVLMDIGGEVCVGRYVDGSFVSRSWGHSENDVRLWASWPKAPKW
Ga0214921_1000181344F010463AGAAGVIAHPQELVLAATIHRVKMCEDKLREFEQMVTTLTATMAQNRAELASKGLERFVMGVITPLDIPKELIPTRGKGGARRNREYSTVKKRWTLWKHQLDSGMSMSELARAWGVHRTTIMNAKSRNFAVRKAKGGSQ
Ga0214921_1000181352F007164N/AMSEKQIGMELQKTVRLLDKAKQNAIEQMGEAIGLAADAGDLLLSARVEGLDLEAIQEYAQINGEQARRYERVAKARPSLQAPSPSGLKQLALWTGLLPDPIETSNPKAEQAWHSYIIKARQWLARKTPSQWTQAQRTQFLEEARPIVEAYREAGGEL
Ga0214921_1000181353F100669AGGGGGMTKGICDLRKFLHKAQVRLTEAGSLIIGYLRKIRRIVRGINKLGDSYNAKCTQNRFRPRLFCES
Ga0214921_1000181355F008938N/AMITQKELREKWGIDAGQLSRMVKRGMPLTSESDAQRWRLANQKRVSKSQIARTPSPTSSEPLKDSDAESYKSKTSLGRLNRAKQAEVVAYSLVATAANNQNPVAMRAAVQGWGEAKKRVAEAEMEHARFEEVTRVLVRMDEVREVFGKWLGAIRNLMDAMPSSLATRANPSDPECAKRAIQEGVDQIFVTIQKADGAFK
Ga0214921_100018137F003049AGGAMKNAKQIIGCRKSKRGESTKGIGIIKFGKSRIDKTRYVLVDITYDEKAGKGLYEAGMIALRHDPEAVIEYAIKKALAGMAKCKR

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