Scaffold Ga0214921_10001813

Overview

Basic Information

• Taxon OID: 3300023174
• Scaffold ID: Ga0214921_10001813
• Source Dataset Name: Freshwater microbial communities from Lake Lanier, Atlanta, Georgia, United States - LL-1505
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 35724
• Total Scaffold Genes: 61
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 37 (60.66%)
• Novel Protein Genes: 15
• Novel Protein Genes with Ribosome Binding Sites (RBS): 11 (73.33%)
• Associated Families: 15

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Lanier, Atlanta, Georgia, United States

Source Dataset Sampling Location

• Location Name: USA: Georgia
• Coordinates
  • Lat. (^o): 34.2611
  • Long. (^o): -83.95
  • Depth (m): 2

Associated Families

Family	Category	Number of Sequences	3D Structure?
F003049	Metagenome	510	Y
F005584	Metagenome	395	Y
F005846	Metagenome	388	Y
F007164	Metagenome / Metatranscriptome	356	Y
F008741	Metagenome	328	Y
F008938	Metagenome	325	Y
F009142	Metagenome	322	Y
F010463	Metagenome	303	N
F011284	Metagenome	292	N
F012433	Metagenome / Metatranscriptome	280	N
F023059	Metagenome	211	Y
F023833	Metagenome	208	Y
F027777	Metagenome / Metatranscriptome	193	N
F033350	Metagenome	177	N
F100669	Metagenome	102	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0214921_1000181311	F008741	GAG	MSVKTIKYSQRLGDVLRCLPAAKHLADQGHEVFFDCFEQYHGVFDLVSYAKAGSKGDVLDLEIWPSRYNDFIKSRKTWHDFVYSHPEIKEADKTNIILDKLDDKPAEGLPETYNLVAPFGISQTFYRNPLTLIQDAVKELGKESVFVLCPPDIKIQGLNTYTAKSVEQMVKAIRGADQFWAVNSSPIIIASAVRRGKESRFWGEKNEAEVQNVFHFEGLTRMD
Ga0214921_1000181312	F005584	GAGG	MAGSIPTSYFAMDLSNMIQDLYQSVTGLGSTSVSASVTDLTTASELEIGGEVFRVTQSLVVLASGISAPVIGSLCTVSGVERMIGGFSQSTDGLSFTIELAEITT
Ga0214921_1000181314	F009142	N/A	MTNSVQINVEDALDNLLANIPNLNVYKTNRVGAKLFPSATISASVGGQLLGNYTGVYEVAVTIDYSDTAAKISQADFDAEYCSIFEAFYSETPPLFTKIQNNIVDTKVYTARITGQTPTIRTAKRAWQRGLNMSLICTPSETSDGLRSLNFFQTQNSMYVALI
Ga0214921_1000181317	F012433	GAG	MSADQVADLRERLARIEERQVGLISILERHTSEIAEWTSRMNGKVDTLERDAHTIKTKLWLVALVSGAVFSTIWELIKVRVFPR
Ga0214921_1000181328	F023059	GGA	MWEAILASLAGVIGIIAWWTKNRAKTRRERDDEEIAYNRRLRDSEVDSWIHRR
Ga0214921_1000181330	F011284	N/A	MTLEQGVEKTQKHFTKKHELHLTTLQVAAVESMEKKYKRGVEEHGGTKLWEMPSVKLVENAIEEATDQLTYLLTLRSQMHIVLELARDGCTDETLTNPRARECCNLIYTTLTGQTKPPL
Ga0214921_1000181334	F005846	GAG	MTSSPLPARPVASAVPASHKEFAKRTSIEGKLNGWCGWFDQETKQGYNRHGKFASNHNLMAERILGAGIKSRFVHCEIMGQRTKTGKGTIVVMDAFDPANPKPYAERMKEIEHLEAVTFDVPQNKLLRFVQLAHHKINAIWEEMNFQNNRAGEVIWEGFVMKATDDGKYPFITNPSYCSPAWQKQRIRW
Ga0214921_1000181337	F027777	AGGA	MSEELPTFWYEEPANKKLPNETTDEWVVRLFGAFPDTEFDQRNDFRCLNLPTTAKENAEGFGIFDYGQDKQ
Ga0214921_1000181339	F023833	AGGA	MKSHSELLQDIINDAMRKAAVLERERCAELVQRLADGTEDQVIQDILNEVVVALRRLSDE
Ga0214921_1000181340	F033350	GGAGG	MSVDVDVPRVKWSMLEWKTMEEKPKNDEKVLMDIGGEVCVGRYVDGSFVSRSWGHSENDVRLWASWPKAPKW
Ga0214921_1000181344	F010463	AGAAG	VIAHPQELVLAATIHRVKMCEDKLREFEQMVTTLTATMAQNRAELASKGLERFVMGVITPLDIPKELIPTRGKGGARRNREYSTVKKRWTLWKHQLDSGMSMSELARAWGVHRTTIMNAKSRNFAVRKAKGGSQ
Ga0214921_1000181352	F007164	N/A	MSEKQIGMELQKTVRLLDKAKQNAIEQMGEAIGLAADAGDLLLSARVEGLDLEAIQEYAQINGEQARRYERVAKARPSLQAPSPSGLKQLALWTGLLPDPIETSNPKAEQAWHSYIIKARQWLARKTPSQWTQAQRTQFLEEARPIVEAYREAGGEL
Ga0214921_1000181353	F100669	AGGGGG	MTKGICDLRKFLHKAQVRLTEAGSLIIGYLRKIRRIVRGINKLGDSYNAKCTQNRFRPRLFCES
Ga0214921_1000181355	F008938	N/A	MITQKELREKWGIDAGQLSRMVKRGMPLTSESDAQRWRLANQKRVSKSQIARTPSPTSSEPLKDSDAESYKSKTSLGRLNRAKQAEVVAYSLVATAANNQNPVAMRAAVQGWGEAKKRVAEAEMEHARFEEVTRVLVRMDEVREVFGKWLGAIRNLMDAMPSSLATRANPSDPECAKRAIQEGVDQIFVTIQKADGAFK
Ga0214921_100018137	F003049	AGGA	MKNAKQIIGCRKSKRGESTKGIGIIKFGKSRIDKTRYVLVDITYDEKAGKGLYEAGMIALRHDPEAVIEYAIKKALAGMAKCKR