Scaffold Ga0214921_10001609

Overview

Basic Information

• Taxon OID: 3300023174
• Scaffold ID: Ga0214921_10001609
• Source Dataset Name: Freshwater microbial communities from Lake Lanier, Atlanta, Georgia, United States - LL-1505
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 37983
• Total Scaffold Genes: 80
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 54 (67.50%)
• Novel Protein Genes: 21
• Novel Protein Genes with Ribosome Binding Sites (RBS): 13 (61.90%)
• Associated Families: 21

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Lanier, Atlanta, Georgia, United States

Source Dataset Sampling Location

• Location Name: USA: Georgia
• Coordinates
  • Lat. (^o): 34.2611
  • Long. (^o): -83.95
  • Depth (m): 2

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001561	Metagenome / Metatranscriptome	670	Y
F002398	Metagenome / Metatranscriptome	563	Y
F002406	Metagenome	562	Y
F004583	Metagenome / Metatranscriptome	432	Y
F006182	Metagenome	379	Y
F006220	Metagenome	378	Y
F007310	Metagenome	353	Y
F008494	Metagenome / Metatranscriptome	332	N
F009266	Metagenome / Metatranscriptome	320	Y
F013087	Metagenome	274	Y
F018927	Metagenome	232	Y
F019834	Metagenome	227	N
F027516	Metagenome	194	Y
F033432	Metagenome	177	Y
F039133	Metagenome	164	N
F040618	Metagenome	161	N
F060914	Metagenome	132	N
F070110	Metagenome	123	N
F072286	Metagenome	121	N
F085699	Metagenome / Metatranscriptome	111	N
F103250	Metagenome	101	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0214921_1000160911	F085699	AGGTGG	MNNPCLNVGHAGASGVVGQKQMKSLLDVTTHIEDYFKQTDISFRCERNPKGSLIPGGVGVFQFKRAGEGIFYSNGLPVLFVTRLSSENGCDANIGKWYRKQWYYENYLRKLNPECTHLTFIHASEQTGILSTLIAGVSMVMAQDFNQHTFNSYNKGGNAIYYYDTDKGNDTWYDIHEKIINIIRCAKVKVDKPDLFTI
Ga0214921_1000160913	F018927	N/A	MNKHIQISRHLSVDGVTTYYVIEKNKNSSTIIWHGTNKQAAYQVAYRNARKDNAPLYDTQYVAETDKNGVKHIVPVGNELLEVTE
Ga0214921_1000160914	F039133	AGG	MDTTDKVIVRFKSRTPKMLYTAHYNGLLLASGRDPVDLGEYYASKYATEWILQDGKNFYTQRGVNK
Ga0214921_1000160916	F033432	N/A	MTDYRKKFLSLWSSIMAEERWHKFQSQACTPNCKGWNAWAPLCECGKNYCTFKPSGNLEEMQMVIEARPLDF
Ga0214921_1000160922	F040618	N/A	MENTTTVRMSMTVNVKDVSKKSSCIGFVGQGTWFDGKPFIVTQYQASPSYWYFFVYNDFVPQENFFNGFDGIYSYGKEIWHLNPDNGYFSGIVYLYSAMTETLYIPYSISQPKKETSPIFLFAIS
Ga0214921_1000160927	F004583	AGGAG	MKSTRNSDRLREILLSTRQQIVSLKDIQIDLMNHDSKVANQVATQISALEEVYKHQLSLVKSAETLEPKPRGWFTGHIKTKEDRLANIMD
Ga0214921_1000160928	F006220	GAGG	MKKFKKFVEELAIASGTEMMRASQMRPSTFKDKSKYTRKTKHKNRQDKNSDDSFI
Ga0214921_1000160929	F007310	N/A	MRTVLWNNTERWFNHHHYEPLLEDVTGFDLKQNLCSESIKYMAKRLRDTNYHRMFRIKYSIYEDEYKALVQKFNYYADNNGKIEVSYEKVQEVC
Ga0214921_1000160931	F070110	N/A	MFLDDYPIVVWFVRKIKNNYCLYDSANQLVMRRDEKRKKEIYQYCADNGIEVQDEF
Ga0214921_1000160933	F103250	AGGA	MQKIEINTKYGWSTAKIGRYTNGHIGIQLFQGGSPLVKISTNLPDTNIDSREFHFNSNDAGTLKDDVLNSGHFEDTGKVDKSGFCEYPVFRLKDHVEVVEG
Ga0214921_1000160934	F008494	GAGG	MNKEQAITSFMKAVKTYTNSIDKTAQTNIAYKKAVYALEDAVNQIYRDVDVKELGSNAEQRNAKISAQTSELIVAKRELEYQLEVARAEEARAKTECDQIKYIIRALEVKEEA
Ga0214921_1000160936	F001561	AGGA	MQTSEQKLKLLNKTIETLWHGVADTKDGDYPRIINLYKEVLKINYKDRDAWENMVWLMWSMAVNKKDTAWLLEAEKFAKTYLSLMPNGYRSYEYLGTFYRSMIKDERLAVRYYESAIRWKDAETSTHHSLIALCIKTGDLVKAKDYCLLTLKRFPKDAYATMRLKDLNVR
Ga0214921_1000160937	F013087	N/A	MESKVWIYFSKTGTGYEMLGSDIISGIDAYLHTDGTYLIEYSFSGQKDSMHFFIYEYDKSQKRRRTISEGYQRQDVLVNFAKNVHVCHNVRQEIYKEYMMQLEDEEIQNAN
Ga0214921_100016095	F027516	N/A	MIYCSCKGVEMTYQEYIIKCEVAKTAFKCHVSSALFVENVTAEQRIAWITADLKKLEEELEAIGKAFDEQDEVGDPFEGIEVK
Ga0214921_1000160963	F072286	N/A	MNPELSLENPTAEKTFTYYITERHGYVETTLSYLRKLKISKLVSVYSRHMRGKVYIEEDGDLRLFIKRLEHDNINVTLKEDYSRPQSFFDNLPSLDDYTWTGEQFDKYKSDWMIDFKCYFSKYDNIKHVRDSIFETKDGKQIKIYPTVYLDGKPLTPAQAKKIGFEPQSIVTKDLEEYYD
Ga0214921_1000160964	F009266	AGGA	MTVKELKILDKEIQYLCNYQDRIKEIRQVTNINPAYSFTKEAEIIEYLYKTILEERKKDKSTFFSVGTSGWYVIYLRENKKYKKGEKFKIKIFHSFAYTDNLS
Ga0214921_1000160965	F002398	AGGA	MIPLISIFLLTSLDPIKNFVSLKTYISENAKIHCGVYFINEEIPDFPRVNIIEKSKVDFFKYLDTIDIEHTQVGSYYFFYRKPK
Ga0214921_1000160966	F060914	AGCAG	MQLKRLIKVRTDISSSIFPIQLFQVDDYFTAEENGVELFRYKSQHLCSIKAKELIRKRKNEQNELNIQKIKELKEQGILYDTLN
Ga0214921_1000160968	F019834	GAGG	MKELKFTITGTIFVPDSVEYEYNFENQIYSFKINDKTYSLIAGLEADEKEIIVTDDNFKSHDIGFFEYEDAYFED
Ga0214921_1000160969	F002406	GGA	MADRLRDELSSEYDDETKDLIIRAFMQGLFQQPGIVEELKSSSLIESDYFEDAE
Ga0214921_1000160973	F006182	AGGTGG	LKINFNVTGTMEIPDDAIKHYDVAGKLYALEFNDIMYMLQVCIVAEAGAGGYDILHQFEEMENHSITNLRYKDAEFSED