Basic Information | |
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Taxon OID | 3300023174 Open in IMG/M |
Scaffold ID | Ga0214921_10001599 Open in IMG/M |
Source Dataset Name | Freshwater microbial communities from Lake Lanier, Atlanta, Georgia, United States - LL-1505 |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | DOE Joint Genome Institute (JGI) |
Sequencing Status | Permanent Draft |
Scaffold Components | |
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Scaffold Length (bps) | 38172 |
Total Scaffold Genes | 57 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 12 (21.05%) |
Novel Protein Genes | 3 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 1 (33.33%) |
Associated Families | 3 |
Taxonomy | |
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Not Available | (Source: ) |
Source Dataset Ecosystem |
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Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Lanier, Atlanta, Georgia, United States |
Source Dataset Sampling Location | ||||||||
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Location Name | USA: Georgia | |||||||
Coordinates | Lat. (o) | 34.2611 | Long. (o) | -83.95 | Alt. (m) | Depth (m) | 2 | Location on Map |
Zoom: | Powered by OpenStreetMap © |
Family | Category | Number of Sequences | 3D Structure? |
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F016772 | Metagenome / Metatranscriptome | 244 | Y |
F032917 | Metagenome / Metatranscriptome | 178 | Y |
F053824 | Metagenome / Metatranscriptome | 140 | Y |
Protein ID | Family | RBS | Sequence |
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Ga0214921_1000159910 | F016772 | N/A | MKKLLPFILIPILLTSCATTNNGGNSTGGTVDPRSGVEAALPYIAPAVTLTCTVVLEQALSPDDKVEKAKLINHVATVVEALTQGSTPTPDQLQKALSDYLPADKAHWAKYIVAVKDIYAAQFARLNGDAKLGIDVLNAIAKGCRMATEEYVN |
Ga0214921_1000159912 | F053824 | N/A | MLLLKMKGGMKFMSIDYSNKDLRPKTFYVKMERSRNGEFTVKRARVLEQKNQYASTIRRVDARDLTRAIRRSGLQVA |
Ga0214921_100015998 | F032917 | AGGA | MLRKFAIFSLSSLLLCSCTTVTPDKVKDEIASYDATTPSGYDVQNSGFIGFTDDGRGLITPFGLLRYNTLIKAYKVRFKSFKGVELNESDGVTEFTDKLNNKLYIIDQQHLVYYAILNSWRKDGKEPDSIWDKTKDLIK |
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