Scaffold Ga0214921_10001599

Overview

Basic Information

• Taxon OID: 3300023174
• Scaffold ID: Ga0214921_10001599
• Source Dataset Name: Freshwater microbial communities from Lake Lanier, Atlanta, Georgia, United States - LL-1505
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 38172
• Total Scaffold Genes: 57
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 12 (21.05%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (33.33%)
• Associated Families: 3

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Lanier, Atlanta, Georgia, United States

Source Dataset Sampling Location

• Location Name: USA: Georgia
• Coordinates
  • Lat. (^o): 34.2611
  • Long. (^o): -83.95
  • Depth (m): 2

Associated Families

Family	Category	Number of Sequences	3D Structure?
F016772	Metagenome / Metatranscriptome	244	Y
F032917	Metagenome / Metatranscriptome	178	Y
F053824	Metagenome / Metatranscriptome	140	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0214921_1000159910	F016772	N/A	MKKLLPFILIPILLTSCATTNNGGNSTGGTVDPRSGVEAALPYIAPAVTLTCTVVLEQALSPDDKVEKAKLINHVATVVEALTQGSTPTPDQLQKALSDYLPADKAHWAKYIVAVKDIYAAQFARLNGDAKLGIDVLNAIAKGCRMATEEYVN
Ga0214921_1000159912	F053824	N/A	MLLLKMKGGMKFMSIDYSNKDLRPKTFYVKMERSRNGEFTVKRARVLEQKNQYASTIRRVDARDLTRAIRRSGLQVA
Ga0214921_100015998	F032917	AGGA	MLRKFAIFSLSSLLLCSCTTVTPDKVKDEIASYDATTPSGYDVQNSGFIGFTDDGRGLITPFGLLRYNTLIKAYKVRFKSFKGVELNESDGVTEFTDKLNNKLYIIDQQHLVYYAILNSWRKDGKEPDSIWDKTKDLIK