NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
x
This website uses cookies to improve user experience. By using NMPFamDB you consent to all cookies in accordance with our privacy policy. OK
Scaffold Ga0214921_10001583

Scaffold Ga0214921_10001583


Overview

Basic Information
Taxon OID3300023174 Open in IMG/M
Scaffold IDGa0214921_10001583 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Lanier, Atlanta, Georgia, United States - LL-1505
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)38409
Total Scaffold Genes64 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)36 (56.25%)
Novel Protein Genes18 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)13 (72.22%)
Associated Families18

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Lanier, Atlanta, Georgia, United States

Source Dataset Sampling Location
Location NameUSA: Georgia
CoordinatesLat. (o)34.2611Long. (o)-83.95Alt. (m)Depth (m)2
Location on Map
Zoom:    Powered by OpenStreetMap ©

Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F003049Metagenome510Y
F005584Metagenome395Y
F005702Metagenome392Y
F005846Metagenome388Y
F007164Metagenome / Metatranscriptome356Y
F009142Metagenome322Y
F011284Metagenome292N
F012113Metagenome / Metatranscriptome283Y
F012433Metagenome / Metatranscriptome280N
F014488Metagenome262Y
F019102Metagenome231Y
F023585Metagenome209Y
F023833Metagenome208Y
F025225Metagenome202Y
F027777Metagenome / Metatranscriptome193N
F033350Metagenome177N
F048161Metagenome148N
F093492Metagenome106Y

Sequences

Protein IDFamilyRBSSequence
Ga0214921_1000158313F007164AGGAMSEKQIGMELQRTVKALEKAKETAIEQMGQAIGLAADAGDILLSARTEGLDLEAIQEIGQINGEQARRYERVAKARPSLQAPTPGGLKQLALWTGLLPDPIEISNPKAEQAWHSYIIKARQWLARKSINQWTPAQRTQFVEEARPIVEAFKEAGGEL
Ga0214921_1000158315F014488GGAMNHLGQDPADSILASYTPDMAEHIDTLQDRVKERLSKMQAMNPSIDLDQLAKLTAEVVEQTIKHEGDSQMLRHRRDDTLDESLLALATNRSPDSLTSIAKRYINPSTGKPYTRAAISARLTELSQRTGLVLRIQRSERVRQIYKERALRVHKKRREECPKWNSEAWEKGIKRRGKKR
Ga0214921_1000158321F023585AGGAGMSVKRLKLVDEFHASVSRRLKELFKDFDHAKRENYKDIINHLDYSHRITKELLERAKKYQKRDVEKAKK
Ga0214921_1000158322F033350AGGAGGMSAVDVRVPKTKWSMLVWKNIKEKPYNDERVLMDIGGEVVVGRFIDGSFVSRSWGHSENDVRLWASWPKAPKW
Ga0214921_1000158323F023833AGGAMKSHSELIQDILNDARSKAADLERERCADLVQQLADGTEDAVITGILNEVVLAIRRLGDVGR
Ga0214921_1000158325F027777AGGAMSEEMPTFWHQEPAKKKLPNETTDEWVVRVFGAFPDTEFDSRNDFRFLNLPKTQKENAEGFGVFDDGQNKQ
Ga0214921_1000158327F005702GAGGVIIFLVAFFGLLILQGVRIFAKHIDQQNYDRRQFYLYVAAELDKMDKIVAEGNQPKEPKEPELLLPTKNWVGRN
Ga0214921_1000158328F005846N/AMTSLPLPAKPQASAVPAWHIEFKKDTAIEGKANGWRGLFDQETKQGYNRHGKFASNHNLMAERILGAGIKSRFVDCEIMGQRTKSGKGTIVVMDAFDPASPKPYAERMKDIEHLEAVTFDIPNNKLLRFVRLAHHKINSIWEEMNFQNNKAGEVIWEGFVMKSLDDGKYPYITNPSYCSPAWKKQRIRW
Ga0214921_1000158335F011284N/AMTSEQGVEKTTEEVFTKKHDLHLTTLQMAAVESMERKYKKGVVEHGGTKLWEMPTARLVENAIEEATDQLTYLLTLRQQMHIVMELARDGCTDETLTNPRARECCNLIYTTLTGQSKPHL
Ga0214921_1000158338F012113N/AMNQLLSFVQTQDLFAWLGALTALLSAVIAVASLIPGDEPEATLTKIVSFLSKFSKK
Ga0214921_1000158343F093492GGTGGMASLVIGSAIGSKVLQRQNFNKEPNGLGTIIEAYAIKTANRDTVVPEKDTVHSAFSSSANKYSRMVVESVTTEEQDGGITQMLVTYVGLTTLTGLPPAIVRLIPTVGAGIYGPPLTIEAEFVTDVTETMFIQGNINATAQITLGNVAFGTVNQMPPFINGTQMPLNPRPPGKVQNPFFFGDYFGYCVESFSCERRGLFLIARTTYTEKSGFFTVS
Ga0214921_1000158345F025225AGGMITVELLNQAKFMHKLEQYQKASKKNMADVINQKLGDVAVTAIGTTYRTNASQIASELQRVEGQVVTKKVFKPFGLTKSGKVKKRKIGEYAVKYKAKSASYAGTYKLVNWLLKNRGLATLGKTKVGVGGLGMGGGKPGTIGALARRLVAGRKRSVNYIRNGWAAAAAVFGKRAGLTRGDYSPEAIKRLGGGSKADSKKAQMEGIIFNRAGDLDTRYYPVRKRAVSGAVKVGMPGLKMAIDKVMKDMNVYLARKNKEASDKLKL
Ga0214921_1000158347F019102N/AMSISLEEELNSAFISPDKEYMGEKLAPYTEGSRLLLLQVRDDNDSSIYFIWSFIYMHIQIAKGRKEAIKLAWNRDLFREKIMDFIEGKTEADRDAATQIVSNILDEAQKGKVEAIPAPHQAELGNA
Ga0214921_1000158350F012433GAGGVSADQVADLRERLARIEERQTNIISILERHTSELAQWTSKINSKVDTLERESHTIKTKLWLVALVSGAVFSTIWELIKVRVFQR
Ga0214921_1000158355F009142N/AMNNSVQINVEDALENLLANIPNLNVYKTNRVGAKLFPSATISASVGGQLLGNYTGVYEVSVTIDYSDTAAKISQTDFDAEYCSIFEAFYSETIPLFTKIQNNILDTKVYTARITGQTPTIKTAKRAWQRGLKMSLICTPSELDDGLRYLDFHEKRNSMYVAVI
Ga0214921_1000158357F005584GAGMAGTIQTSYFSTDLQFMIADMFQTVTGLASSAVSASVTDLTTASELEIGGEVFRVTQSLVVLASGISAPVIGSLCTVSGVERMIGGFSQSTDGLSYTIELAEITT
Ga0214921_1000158362F003049GGAMKNAKQIIGCRKAKKGEDTKGLGMIKFGKSRPDPTKYVKVDITYDEKAEKDLYECGMIALKHDKEAVIQYVIVKALKELVSKK
Ga0214921_100015838F048161AGGGGGMLGLKIGVGIVLGIVLLNVAFWACVILAYLLATLFECMGKWIKK
 ⦗Top⦘



Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
© Pavlopoulos Lab, Bioinformatics & Integrative Biology | B.S.R.C. "Alexander Fleming" | Privacy Notice
Make sure JavaScript is enabled in your browser settings to achieve functionality.