Scaffold Ga0214921_10001550

Overview

Basic Information

• Taxon OID: 3300023174
• Scaffold ID: Ga0214921_10001550
• Source Dataset Name: Freshwater microbial communities from Lake Lanier, Atlanta, Georgia, United States - LL-1505
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 38835
• Total Scaffold Genes: 49
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 15 (30.61%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (33.33%)
• Associated Families: 3

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Lanier, Atlanta, Georgia, United States

Source Dataset Sampling Location

• Location Name: USA: Georgia
• Coordinates
  • Lat. (^o): 34.2611
  • Long. (^o): -83.95
  • Depth (m): 2

Associated Families

Family	Category	Number of Sequences	3D Structure?
F017268	Metagenome / Metatranscriptome	241	Y
F038565	Metagenome / Metatranscriptome	165	Y
F043788	Metagenome / Metatranscriptome	155	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0214921_1000155016	F017268	N/A	VNLDITLVFDLVMGAASFLGGWLFTRLFSLFDKQESLMKEINDKTFSDFITLRKELELESRKHQQEIADLALKISTTYATKEAFDIYLDRIESKIDRNFETIQSYIIRNNDKSKKD
Ga0214921_1000155033	F038565	N/A	VTNKKKFNFPESLLKQIDECSYGGYILFNFSAKGEPQVYTKFDNQINAMALLYYLNTWGQSVDQLNFEATTNLINKNNEKEYEDNDEDS
Ga0214921_1000155040	F043788	GAGG	MASLDNIYDAIQKLEDNEIEYLLITVEKGKKKGKADVFYSLKDQASMKILAKGLSIFNQEIDKISKEQEDDENQHE