Scaffold Ga0214921_10001498

Overview

Basic Information

• Taxon OID: 3300023174
• Scaffold ID: Ga0214921_10001498
• Source Dataset Name: Freshwater microbial communities from Lake Lanier, Atlanta, Georgia, United States - LL-1505
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 39712
• Total Scaffold Genes: 58
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 48 (82.76%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (80.00%)
• Associated Families: 5

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Lanier, Atlanta, Georgia, United States

Source Dataset Sampling Location

• Location Name: USA: Georgia
• Coordinates
  • Lat. (^o): 34.2611
  • Long. (^o): -83.95
  • Depth (m): 2

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001094	Metagenome / Metatranscriptome	780	Y
F001599	Metagenome / Metatranscriptome	665	Y
F006544	Metagenome / Metatranscriptome	370	Y
F026858	Metagenome / Metatranscriptome	196	Y
F034508	Metagenome	174	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0214921_1000149813	F001599	N/A	MVDGKFMQGVTDVMLHSGVEVVTTLRSQGNQIARQRDKVINYWYDNNKSDWLLWVDSDVVISPDTFRLLWDNKDVEERPILSGVYFTTDQPEETLMTPMPTLFDFVVNNDQIGVKRIHPLPNNKLVKIGAAGMGFVLMHRTVVDRIRKAIPEGPLFSDIGHGKNFLGEDIYFFALCDKAEIPVWAHTAATVPHMKRFSFDVNYYDAFVGDKRK
Ga0214921_1000149823	F001094	AGGAG	MNKDKLKAIVATYLRAAVASVIALYLAGVTDPKALLSAAVAAVAGPVLKALDPNATEFGKTN
Ga0214921_1000149836	F034508	AGAAGG	MNWEQIEPWDYIVVSVAAEYHKRYDMVELEDIKQELYQWFLEHPNKLTEWESIGKRDAKNLIYRSLRNQALDYCQKWKAKSIGYEVSDLFYYEPAMVEALLPPVLRGEFGVMPVLNLGKTGRPPAPSEGGNMMAMMVEINSAYNKLSKEDKVVLFFKYAESLDYAAIAAEMELGSEDAARMRHNRAIKKLITRIGGFRPHLDKDSPDKVTEMPDEIVSTDDDATDNDGHQETH
Ga0214921_1000149848	F026858	GAGG	MSADTNLLLDLTPREVEVIRMALRAQQDIHSRNDFKVLVIEVESLRSKISDAILDLRKAV
Ga0214921_1000149856	F006544	AGTAGG	MTTLVAIQGDGWSVLGCDSRSSDESGRPINMATHKIIENNGILIAGSGAGRGSNILQFGWKAPKPTASEDLDVFITQKFIPLMRQAFVDAGYDMKEDGDAAAHDSSFLVSVRGVIYPIFEDYSWDRDIRGIYYSGSGGDVALGALAAANVKALTKPESVEKAVRKAIQIAAQWDIYTAEPIITKIQYTK