NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0214921_10001461

Scaffold Ga0214921_10001461


Overview

Basic Information
Taxon OID3300023174 Open in IMG/M
Scaffold IDGa0214921_10001461 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Lanier, Atlanta, Georgia, United States - LL-1505
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)40257
Total Scaffold Genes68 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)55 (80.88%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (50.00%)
Associated Families4

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Lanier, Atlanta, Georgia, United States

Source Dataset Sampling Location
Location NameUSA: Georgia
CoordinatesLat. (o)34.2611Long. (o)-83.95Alt. (m)Depth (m)2
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F036693Metagenome / Metatranscriptome169Y
F047646Metagenome / Metatranscriptome149Y
F058703Metagenome / Metatranscriptome134Y
F059755Metagenome / Metatranscriptome133Y

Sequences

Protein IDFamilyRBSSequence
Ga0214921_1000146112F047646GGAMLEQLREVAGQGGPAAALANELIVIRENYEQGKLNTEEYQYLINEIAEIRAQQELATDEVACRWIVAAAKILISAV
Ga0214921_100014614F059755GGAMKFLETTNFDWMELLNFYERPFRAKLVPAKVLKDLDKYRNDSKGLVNYLKKWRTKVIWKPEKSKAKWVDRYVCVGGEYDPETRQSVLIIYTDHFDTFKFSDELWERFKFRLIQTLMHELIHFMQYDRRGDEWSNYVVPYKKVGIAKKDAERKYLSEFDEIQAYAHCVYLDFKTYRPTISVSELLNRCKKQQDSKTLHYFLKTFDYDFRNNISPRKIIDQIGKWERKYEKFVRKQRRPK
Ga0214921_1000146141F058703N/AMYNSLMMIEKGNKMIDVKVGDYIRAYDFKPMVGREDCFVEGIVEQVKNTEQGYFAYKITATKDVFGGEIQKKGKHSRVGKIVFVPHEVSFMEYAGRVINLTR
Ga0214921_1000146147F036693N/AMKVVYNSIKPRNLVAKDLRTPKYRMRTVESKVKYTRQPKHKKGGYEYQY
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Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
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