Scaffold Ga0214921_10000984

Overview

Basic Information

• Taxon OID: 3300023174
• Scaffold ID: Ga0214921_10000984
• Source Dataset Name: Freshwater microbial communities from Lake Lanier, Atlanta, Georgia, United States - LL-1505
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 49976
• Total Scaffold Genes: 100
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 71 (71.00%)
• Novel Protein Genes: 18
• Novel Protein Genes with Ribosome Binding Sites (RBS): 16 (88.89%)
• Associated Families: 18

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Lanier, Atlanta, Georgia, United States

Source Dataset Sampling Location

• Location Name: USA: Georgia
• Coordinates
  • Lat. (^o): 34.2611
  • Long. (^o): -83.95
  • Depth (m): 2

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000808	Metagenome / Metatranscriptome	882	Y
F003393	Metagenome / Metatranscriptome	489	Y
F004092	Metagenome / Metatranscriptome	453	Y
F004475	Metagenome / Metatranscriptome	436	Y
F006885	Metagenome / Metatranscriptome	362	Y
F010599	Metagenome / Metatranscriptome	301	Y
F011077	Metagenome / Metatranscriptome	295	Y
F017788	Metagenome / Metatranscriptome	238	Y
F018928	Metagenome / Metatranscriptome	232	Y
F019320	Metagenome / Metatranscriptome	230	N
F019826	Metagenome / Metatranscriptome	227	N
F020851	Metagenome / Metatranscriptome	221	Y
F028423	Metagenome / Metatranscriptome	191	Y
F032149	Metagenome	180	Y
F034550	Metagenome / Metatranscriptome	174	N
F034566	Metagenome	174	Y
F054581	Metagenome	139	Y
F084233	Metagenome / Metatranscriptome	112	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0214921_1000098418	F034550	AGGAG	MKKLKEWGMAALNENFTFLGFFVAWVVLEGSAKTVVGYVTLVSVAIWFATIGIRKED
Ga0214921_100009843	F004092	AGG	MLEQKFTVYPGKWPCKTCEEIVTSLRYWKETGDATWMCTQKHISKVGLIPQKKKKRDYLK
Ga0214921_1000098441	F028423	AGTAGG	MENLEKNELIQLVGFYKQKLSDVELELLKLQLEVNKLNSMVLSLSQEPVKKTK
Ga0214921_1000098442	F006885	N/A	MEYLLVIGLTLLSYWSIIKISNKKRMAFLNKNKYRQSSIYEMVKDIVPKQRFDKPKVITQSQRHIQKNMLRVVIADGSAYWILNNVFYTANAINGRVDEETIQPLDIENMSTKELDKMLSILDDLKQGVGPNDSSSTGNKGI
Ga0214921_1000098444	F018928	AGGAG	MIIRSLNTMEKIINKNKNLLWNGWDVIDLKESDVAKTSPMGIRIKDKWYLHRIYKPGRNGWDIPNKYKD
Ga0214921_1000098452	F032149	GGAG	MKKKIIILILSAISIFIAINLFFASRLSQLSDLDLFDIEEEE
Ga0214921_1000098454	F010599	GAG	MEMMFLIFFATLSFSFGLSYWATFDKLKKSNLLLAELFIKTRALEELNSQIDNGISMSDDTIHKENFIKFLSDSRDWAFEYIERSQQTIKEVSDELRVKGLNNYSEKLLALLPEMGQEKR
Ga0214921_1000098467	F004475	GAGG	MTNWTEELNDKQKEDVWNFVVFTVKEIREQIAKDIEATIPLWKSKGFLKSRRTQRAFEASAAIARGQNEQIDG
Ga0214921_1000098469	F017788	AGGA	MKKIIITFLLISLLIPTTSAQAATKSLNTKANKVSCKNIKTKYESDVMSKWSNGLASDQDVLKEIDLNIAMLTAKQKSTTGKIKTTIASWITAEKNTKIALMDKNVKLITDAMNLKISSITNFDKLCKSIEK
Ga0214921_1000098472	F020851	AGG	MENLVQLAITMTEIDTGTELPLKERELMKQRILTKLEDINK
Ga0214921_1000098473	F034566	AGG	MSIKIKTIIWVQTTLILILGLSMLFIGGDLKQTRKMTLDQSNFCIKYTSDIIASSRLDLIKEQDAHVRTVDKANSVIDDIINRYNLLVARYNKSTGGTNYDPLNTYSYRIRP
Ga0214921_1000098474	F054581	AGGA	MCPHCNTPLIPILYGYANPKYLDMHKQGLIFLVSTTYHTKHDPTSYCKKCEESFDIKL
Ga0214921_1000098475	F011077	GGA	MDTNLTWAEEEVNLWKGWTYSPEKNRYYFNDIGNESLAAFWADEFLNQAY
Ga0214921_1000098477	F019826	N/A	MGFMRRSIRLGISKEEKVAGRITTLLSDFTLDLEAIGFYLAKGSPHIIYTRANEVLEAMQYNKEVDQLDRGVYNGRR
Ga0214921_1000098482	F019320	GAG	MHTLHWIATKAKDRQEAFDIVTVSLMPNEDGNRMADWSDWHVVGGGRWSESAYENSSDMIISYAEKPDEFKKTIEDIKRYRINYMNDKLIKLDNAFDNLKSDVVDYISNDCKLDDKRQFDFSRWEIKEAIDMLNSHWTCDSAFFDHNEFTSSLHYLEERLDKPEEAALHYLVPVDFHF
Ga0214921_1000098485	F084233	AGGA	MTLNVEIYEMDYSCSPGGVNCWEVSTDDELCTTGFATAGEALQHVLDKYPNHELNLNVKSLNWYFKEFADEYAV
Ga0214921_1000098494	F003393	GAGG	MIDLENDDTIQIVEYVKVDMLTSGQLEIDDNILIADEVVSIVDIVSLPDGYTLEIVNDFGEREIIQVGEYDQFDLMMLQ
Ga0214921_1000098496	F000808	AGGAG	MEYTYSLTTSYDGELINTLRVSDMLEAVRAWDKCVDYGFAKEYATYNLSDPTGKMYTKTFYTNGEVVIK