Scaffold Ga0214921_10000890

Overview

Basic Information

• Taxon OID: 3300023174
• Scaffold ID: Ga0214921_10000890
• Source Dataset Name: Freshwater microbial communities from Lake Lanier, Atlanta, Georgia, United States - LL-1505
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 53171
• Total Scaffold Genes: 52
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 20 (38.46%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 3

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Lanier, Atlanta, Georgia, United States

Source Dataset Sampling Location

• Location Name: USA: Georgia
• Coordinates
  • Lat. (^o): 34.2611
  • Long. (^o): -83.95
  • Depth (m): 2

Associated Families

Family	Category	Number of Sequences	3D Structure?
F010748	Metagenome / Metatranscriptome	299	Y
F022821	Metagenome / Metatranscriptome	212	Y
F025447	Metagenome	201	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0214921_1000089018	F025447	N/A	MKTPPQLGIRVGNSMGDVVNAVKGVGFYIDQIGFGSPSTGLTNGMGLKPLGVNYFIKTGAQCSNGANMWHYMQGIPEGNAFGNKVKQAMSEMGNPSLRGLAPGMLEDVQNGLNPAPLMNSLFGSGYPQCRQETLMVGDYNGNIADPSTGEPWISDPQTATRSGGVYVQTRWVQDKDRFGRPVSLTRDEWVAAAKTHNEDGTPKSEGFEQIMSKPATIITVGVLCLLAFAVVRR
Ga0214921_1000089026	F010748	N/A	MTSVLYGSGLNYQAGNPIRHEINAVRRDVDSLRKQVELLTEENLIYRKHIMKLVQGTDGGNAEFTKDLMTLSTSSEDKARREAGGGTVQGGGFRR
Ga0214921_100008907	F022821	N/A	MTYIVESDFIIRAVDKPIHQRNILGQFTSSDIAYQFIEKYLADTKELHTYFARQMLCPKEDYMEYISSERIIAINIVLGQFEDMIYVRKADQ