NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0214921_10000852

Scaffold Ga0214921_10000852


Overview

Basic Information
Taxon OID3300023174 Open in IMG/M
Scaffold IDGa0214921_10000852 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Lanier, Atlanta, Georgia, United States - LL-1505
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)54358
Total Scaffold Genes109 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)4 (3.67%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families3

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Lanier, Atlanta, Georgia, United States

Source Dataset Sampling Location
Location NameUSA: Georgia
CoordinatesLat. (o)34.2611Long. (o)-83.95Alt. (m)Depth (m)2
Location on Map
Zoom:    Powered by OpenStreetMap ©

Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F007108Metagenome / Metatranscriptome357Y
F054025Metagenome140Y
F089901Metagenome / Metatranscriptome108Y

Sequences

Protein IDFamilyRBSSequence
Ga0214921_1000085248F007108N/AMSKNKTNRASVKTTSVAESNRPSSYTKLTYIQKVSRVNRKLRTGDISKIASETGYSTTHVSDVVSGKHVNESIMNRIYDLTRNRLSNAVKLSKMTNN
Ga0214921_1000085282F054025N/AMNSSIKPGDKIKIIKDRIGNKMLANVELGEELVITSISECGKIMYHHNSLALPVNSDCYKKI
Ga0214921_1000085299F089901N/AMENYKAVSINPETFEKTEIETKIPVSLVKQIHLDLTNLKDYLVTPTLINPVDMDSVVFGLMDMNDATMKYMVTISPKQSQ

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