NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0214921_10000845

Scaffold Ga0214921_10000845


Overview

Basic Information
Taxon OID3300023174 Open in IMG/M
Scaffold IDGa0214921_10000845 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Lanier, Atlanta, Georgia, United States - LL-1505
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)54710
Total Scaffold Genes65 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)57 (87.69%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (75.00%)
Associated Families4

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Lanier, Atlanta, Georgia, United States

Source Dataset Sampling Location
Location NameUSA: Georgia
CoordinatesLat. (o)34.2611Long. (o)-83.95Alt. (m)Depth (m)2
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000332Metagenome / Metatranscriptome1283Y
F002933Metagenome / Metatranscriptome519Y
F024264Metagenome / Metatranscriptome206Y
F048848Metagenome / Metatranscriptome147Y

Sequences

Protein IDFamilyRBSSequence
Ga0214921_1000084522F048848N/AMNILITGVTETHTNHPQRASSTKFVSIPELMASAFGRMGHHVDHRAVTSGEDLSRYDKVFVYLYPLDHNALNPDGALWALESRFDAYVCLDDWAFQKILPSWESKIAPESLCEHTWIAPLFPWGSTRAMGLPVEDIIAWDPSPLYEMPAVHQMSWDRRKTEWYNASLSKEAHGWATDQHLAWPIHSVGGKSLGQPRILESDVVWQYGSYKGVLCPTYKHAGSGWWRIRYLHAAHAGCVLGGDPKELGVIDPSYAYTLHELENMDDHQLQLTAAQQATYLRTASLEDTLSKLEGILNDRNSRRG
Ga0214921_1000084541F002933GAGMIPPLHKWYPMLGVADYPTKTDALERRAERLEEEYKQALKMKKVKDKIDDLEFELYVKKAERNQLNLEIFTNRKLDIYV
Ga0214921_1000084542F000332GGAMRWFILLLLVLGLVGAVAKSGCHVREFYGIAYTIHDPTLRHKEMVAWLDQNAGHCKSTDYVVIWNNLSEWAGTADSTWLRNKVVHGYKDALEREKK
Ga0214921_1000084552F024264AGGAMSTLTNVFAAHKDATGTIYAGATNLAGYQLLTGGTAGEIVFRDGGSGGTVLLRVNIAATPTNPFSTLLPGNGIRFNTDIHVTLPTSAAVTIFCG
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