Basic Information | |
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Taxon OID | 3300023174 Open in IMG/M |
Scaffold ID | Ga0214921_10000845 Open in IMG/M |
Source Dataset Name | Freshwater microbial communities from Lake Lanier, Atlanta, Georgia, United States - LL-1505 |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | DOE Joint Genome Institute (JGI) |
Sequencing Status | Permanent Draft |
Scaffold Components | |
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Scaffold Length (bps) | 54710 |
Total Scaffold Genes | 65 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 57 (87.69%) |
Novel Protein Genes | 4 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 3 (75.00%) |
Associated Families | 4 |
Taxonomy | |
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All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage | (Source: UniRef50) |
Source Dataset Ecosystem |
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Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Lanier, Atlanta, Georgia, United States |
Source Dataset Sampling Location | ||||||||
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Location Name | USA: Georgia | |||||||
Coordinates | Lat. (o) | 34.2611 | Long. (o) | -83.95 | Alt. (m) | Depth (m) | 2 | Location on Map |
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Family | Category | Number of Sequences | 3D Structure? |
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F000332 | Metagenome / Metatranscriptome | 1283 | Y |
F002933 | Metagenome / Metatranscriptome | 519 | Y |
F024264 | Metagenome / Metatranscriptome | 206 | Y |
F048848 | Metagenome / Metatranscriptome | 147 | Y |
Protein ID | Family | RBS | Sequence |
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Ga0214921_1000084522 | F048848 | N/A | MNILITGVTETHTNHPQRASSTKFVSIPELMASAFGRMGHHVDHRAVTSGEDLSRYDKVFVYLYPLDHNALNPDGALWALESRFDAYVCLDDWAFQKILPSWESKIAPESLCEHTWIAPLFPWGSTRAMGLPVEDIIAWDPSPLYEMPAVHQMSWDRRKTEWYNASLSKEAHGWATDQHLAWPIHSVGGKSLGQPRILESDVVWQYGSYKGVLCPTYKHAGSGWWRIRYLHAAHAGCVLGGDPKELGVIDPSYAYTLHELENMDDHQLQLTAAQQATYLRTASLEDTLSKLEGILNDRNSRRG |
Ga0214921_1000084541 | F002933 | GAG | MIPPLHKWYPMLGVADYPTKTDALERRAERLEEEYKQALKMKKVKDKIDDLEFELYVKKAERNQLNLEIFTNRKLDIYV |
Ga0214921_1000084542 | F000332 | GGA | MRWFILLLLVLGLVGAVAKSGCHVREFYGIAYTIHDPTLRHKEMVAWLDQNAGHCKSTDYVVIWNNLSEWAGTADSTWLRNKVVHGYKDALEREKK |
Ga0214921_1000084552 | F024264 | AGGA | MSTLTNVFAAHKDATGTIYAGATNLAGYQLLTGGTAGEIVFRDGGSGGTVLLRVNIAATPTNPFSTLLPGNGIRFNTDIHVTLPTSAAVTIFCG |
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