NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0214921_10000517

Scaffold Ga0214921_10000517


Overview

Basic Information
Taxon OID3300023174 Open in IMG/M
Scaffold IDGa0214921_10000517 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Lanier, Atlanta, Georgia, United States - LL-1505
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)72113
Total Scaffold Genes114 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)49 (42.98%)
Novel Protein Genes8 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (37.50%)
Associated Families8

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Lanier, Atlanta, Georgia, United States

Source Dataset Sampling Location
Location NameUSA: Georgia
CoordinatesLat. (o)34.2611Long. (o)-83.95Alt. (m)Depth (m)2
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000973Metagenome / Metatranscriptome817Y
F001018Metagenome / Metatranscriptome804Y
F002333Metagenome569Y
F004130Metagenome / Metatranscriptome451Y
F027508Metagenome / Metatranscriptome194Y
F029716Metagenome187Y
F052555Metagenome142Y
F055679Metagenome / Metatranscriptome138Y

Sequences

Protein IDFamilyRBSSequence
Ga0214921_1000051710F052555N/AMTTTSTRINEYTVLKRILKELNEVVARESKRPQGCEDLTLSMLALLKEEIIPQLENEIEHDLDYDPTPQYLYDNTGGEPPVTMAEMHACAWQQHQEMHS
Ga0214921_10000517109F027508AGGMIPPDNTTDSSFDIDRFEQLLNRLEASKGRQQRQKSVEGRRDIFSQGLAGMMSNF
Ga0214921_1000051731F002333N/AMTTTATHTELNAAQTTIYTRTNILRAFPDFDDSGVVGIYLRGDSCLVVYRDGTERLYPKDAIKTTFISYTHRLKDFFSYLGPNYRGPSIWHDNSYILFKGWNYSHTLGHLNDNAKLQGQWADKFIRLTDPTKLKALLQSEHTDLGHLVAPDGLRLPDRLPDLDSELETVQEERPMFGEPNCSCGSFQRQLNNLPLFQQEIEGFKPHCIHLTWIAKYRSLLSKRTEARDACPAGVPHTCVAWWYQPPMNHTSDGRFLLLHTKSGVQAPLSHWRTYKPKESFTQRHAWDLFFSMLDAGYVPFPGTSLPQLRMAFKHD
Ga0214921_1000051734F001018N/AMAQITSTKLKELSVIKLYEHYAALEKSLPLLTSESQDLAKAELESCIDLRSEKVDRIYYAMAAHEDALERIKKEGDLVATAKLHHTSQLKSLKGLLSYLRRVLPLDTNKITGRNYQFTLIKKKELTVEINSDPELWNIDEKSTYCMEEETTTTKRVVLRSFSGEVLSDRTEPKTTTKVLPNLDVIRCAYQNGQQLPTGVKVVQDYSVRSKRIFNESRMDLVASEYPRELLPEDSSAD
Ga0214921_1000051735F029716GGALHPSIQESFYLKIPAPTNVDDARIKMSCHDHALKDFDLQLEMNDLQADMLKDNNEVIPYHGDEHDDLEAKRLKLLFGKRFHQNASNAYWYWLQKEKPCSNKVN
Ga0214921_100005175F055679AGGMDLATGWQKHLGVTGGYQLFYQDIYIGEVSIVTGPKGSGIMGNNDPGQEPTYEVWFPGAANPIGYLKLDEIKGIIKYLHQLQNDFCK
Ga0214921_1000051777F000973N/AMYTGIPKGLQDIVAELKSIKHILASMWHSRYQEGETDQLNPEAYTDEYISTEECGRRLGISDQTVRNWISIGKNNPSKGWVEGLHYVNASPNPGKKALLRIPWNTLVRSFAKNKKIDQADLRDNLPSMYCTTTAEKVMENGTPL
Ga0214921_1000051783F004130N/AMHNNAAGFLDGFMDEVMCRCIGEDDFGQPLANQNNDVPLQDMYNRGLVAPMRGLERNPLHIEGMKRPGVSGLIPSMEEGVALGASPKPHTLVLELPEADDEMKIQSAKRRGLMR

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