 |
Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |
| Basic Information | |
|---|---|
| Taxon OID | 3300023174 Open in IMG/M |
| Scaffold ID | Ga0214921_10000422 Open in IMG/M |
| Source Dataset Name | Freshwater microbial communities from Lake Lanier, Atlanta, Georgia, United States - LL-1505 |
| Source Dataset Category | Metagenome |
| Source Dataset Use Policy | Open |
| Sequencing Center | DOE Joint Genome Institute (JGI) |
| Sequencing Status | Permanent Draft |
| Scaffold Components | |
|---|---|
| Scaffold Length (bps) | 79791 |
| Total Scaffold Genes | 127 (view) |
| Total Scaffold Genes with Ribosome Binding Sites (RBS) | 58 (45.67%) |
| Novel Protein Genes | 5 (view) |
| Novel Protein Genes with Ribosome Binding Sites (RBS) | 3 (60.00%) |
| Associated Families | 5 |
| Taxonomy | |
|---|---|
| Not Available | (Source: ) |
| Source Dataset Ecosystem |
|---|
| Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Lanier, Atlanta, Georgia, United States |
| Source Dataset Sampling Location | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location Name | USA: Georgia | |||||||
| Coordinates | Lat. (o) | 34.2611 | Long. (o) | -83.95 | Alt. (m) | Depth (m) | 2 | Location on Map |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F000973 | Metagenome / Metatranscriptome | 817 | Y |
| F001190 | Metagenome / Metatranscriptome | 753 | Y |
| F001806 | Metagenome / Metatranscriptome | 631 | Y |
| F002721 | Metagenome / Metatranscriptome | 534 | Y |
| F106141 | Metagenome / Metatranscriptome | 100 | Y |
| Protein ID | Family | RBS | Sequence |
|---|---|---|---|
| Ga0214921_10000422101 | F002721 | AGG | MAKDARLDLGRYITNPFNRNGFSNKKLSFDDLFSSKPESGNPPWVPSRFNEKDLLNRVMTKKLNLNPDLNFVSNSPFFDDNSKTNEHYDMFGLGTFNRPDDYDFNEGRALTAQRPQEQPDFNPKWVEAYKLSPTLNPQKAAKNPMPRMRNPDPHGFLMATAENQAKSEVENTPSVADLLKRKEEVTKDQEEAQGTKIPTEEQKQPIAPTQV |
| Ga0214921_10000422108 | F001190 | AGG | MEENNDNYFNIDNFQQLLDRLESSKKRQQRQKSVESRRDIFAQGLAGMMGNF |
| Ga0214921_1000042220 | F000973 | N/A | MQHGLRKSLEDIAVELKGIKTILGSMWHSRYKTEETDLMNPEMYADEYISTEECARRLSISDQTIRNWISKAKTKGGTGWVEGIHYINICPRASGKAVIRIPWNELVRSFSKDRPVEPSDLRNKTMYVYKHSAHL |
| Ga0214921_1000042272 | F106141 | GAG | MSKPRSVFFQKGNERIVVWTNHTRWTVTDMVAGGTKRYTKQLAMALSASLMAEGYEATVH |
| Ga0214921_1000042298 | F001806 | N/A | MDAGTRQKRVEGLEAIKNKAVEMAKKGHDSLEVRDFVTESKKHLAYELPDQEAFNKAMNATLKYKQSKNQ |
| ⦗Top⦘ |
|
Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |