NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0214921_10000372

Scaffold Ga0214921_10000372


Overview

Basic Information
Taxon OID3300023174 Open in IMG/M
Scaffold IDGa0214921_10000372 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Lanier, Atlanta, Georgia, United States - LL-1505
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)85331
Total Scaffold Genes104 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)67 (64.42%)
Novel Protein Genes6 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)5 (83.33%)
Associated Families6

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Lanier, Atlanta, Georgia, United States

Source Dataset Sampling Location
Location NameUSA: Georgia
CoordinatesLat. (o)34.2611Long. (o)-83.95Alt. (m)Depth (m)2
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F004053Metagenome / Metatranscriptome455Y
F009512Metagenome316Y
F017466Metagenome / Metatranscriptome240Y
F018925Metagenome / Metatranscriptome232Y
F028709Metagenome190Y
F029327Metagenome188Y

Sequences

Protein IDFamilyRBSSequence
Ga0214921_10000372100F029327GGAGGMGFYKDIEIQIMEWQARGRTQAETYIYFKDYVTQEDVARIFARECDEDLV
Ga0214921_1000037223F018925AGGAMAANVYTTLANTTVYTDKLQIATAANAVTYQVYATALGSAAAVGNLYSTPITIPPNTVFEVYSGAGNKVTVTGTPFTALELGTQSSAQYSVFNSAGQ
Ga0214921_1000037226F017466AGGAMRAREFVAEQRYGAAKDVPASGKKLPKSHRSAIKGAISMPDISQTKQGGSPYTQWRFGIAMAGAPDYPTPPAGAFAGDPLLATYSDADLKIINAAAKSVGAGEVKKLTDNRSTEADWVNKTSPVTGFGGYGR
Ga0214921_1000037280F004053N/AMLIREFLDTKVAPDADKAAAITKFLIGRAKDESARKQMSQDAYIQALKSVGVEVTPENLGDMVNQEPLKNLLEPVEPNSGVVRFKGDTDVATGMSVDQARAVVDSNAKAAMKRRQ
Ga0214921_100003729F009512AGCAGMDELLDRLDKIERAIPQIRNKTARKDLLKMLRNIDTAMNAVSRESVECRRLHRETLHHRELVKKADELITNLEQHLTFAALLNG
Ga0214921_1000037290F028709AGGMKVELDQVYTLKIANGDEIVAKITAEDDATYTISRPLTVVPGREGIQMIFALFTANPDKAVTINKSQVSLMAVSRDEVQDSYVEATTGIKPVRNSKILMG
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