Basic Information | |
---|---|
Taxon OID | 3300023174 Open in IMG/M |
Scaffold ID | Ga0214921_10000372 Open in IMG/M |
Source Dataset Name | Freshwater microbial communities from Lake Lanier, Atlanta, Georgia, United States - LL-1505 |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | DOE Joint Genome Institute (JGI) |
Sequencing Status | Permanent Draft |
Scaffold Components | |
---|---|
Scaffold Length (bps) | 85331 |
Total Scaffold Genes | 104 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 67 (64.42%) |
Novel Protein Genes | 6 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 5 (83.33%) |
Associated Families | 6 |
Taxonomy | |
---|---|
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage | (Source: UniRef50) |
Source Dataset Ecosystem |
---|
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Lanier, Atlanta, Georgia, United States |
Source Dataset Sampling Location | ||||||||
---|---|---|---|---|---|---|---|---|
Location Name | USA: Georgia | |||||||
Coordinates | Lat. (o) | 34.2611 | Long. (o) | -83.95 | Alt. (m) | Depth (m) | 2 | Location on Map |
Zoom: | Powered by OpenStreetMap © |
Family | Category | Number of Sequences | 3D Structure? |
---|---|---|---|
F004053 | Metagenome / Metatranscriptome | 455 | Y |
F009512 | Metagenome | 316 | Y |
F017466 | Metagenome / Metatranscriptome | 240 | Y |
F018925 | Metagenome / Metatranscriptome | 232 | Y |
F028709 | Metagenome | 190 | Y |
F029327 | Metagenome | 188 | Y |
Protein ID | Family | RBS | Sequence |
---|---|---|---|
Ga0214921_10000372100 | F029327 | GGAGG | MGFYKDIEIQIMEWQARGRTQAETYIYFKDYVTQEDVARIFARECDEDLV |
Ga0214921_1000037223 | F018925 | AGGA | MAANVYTTLANTTVYTDKLQIATAANAVTYQVYATALGSAAAVGNLYSTPITIPPNTVFEVYSGAGNKVTVTGTPFTALELGTQSSAQYSVFNSAGQ |
Ga0214921_1000037226 | F017466 | AGGA | MRAREFVAEQRYGAAKDVPASGKKLPKSHRSAIKGAISMPDISQTKQGGSPYTQWRFGIAMAGAPDYPTPPAGAFAGDPLLATYSDADLKIINAAAKSVGAGEVKKLTDNRSTEADWVNKTSPVTGFGGYGR |
Ga0214921_1000037280 | F004053 | N/A | MLIREFLDTKVAPDADKAAAITKFLIGRAKDESARKQMSQDAYIQALKSVGVEVTPENLGDMVNQEPLKNLLEPVEPNSGVVRFKGDTDVATGMSVDQARAVVDSNAKAAMKRRQ |
Ga0214921_100003729 | F009512 | AGCAG | MDELLDRLDKIERAIPQIRNKTARKDLLKMLRNIDTAMNAVSRESVECRRLHRETLHHRELVKKADELITNLEQHLTFAALLNG |
Ga0214921_1000037290 | F028709 | AGG | MKVELDQVYTLKIANGDEIVAKITAEDDATYTISRPLTVVPGREGIQMIFALFTANPDKAVTINKSQVSLMAVSRDEVQDSYVEATTGIKPVRNSKILMG |
⦗Top⦘ |