NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
x
This website uses cookies to improve user experience. By using NMPFamDB you consent to all cookies in accordance with our privacy policy. OK
Scaffold Ga0214921_10000355

Scaffold Ga0214921_10000355


Overview

Basic Information
Taxon OID3300023174 Open in IMG/M
Scaffold IDGa0214921_10000355 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Lanier, Atlanta, Georgia, United States - LL-1505
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)87239
Total Scaffold Genes101 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)28 (27.72%)
Novel Protein Genes6 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (16.67%)
Associated Families6

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Lanier, Atlanta, Georgia, United States

Source Dataset Sampling Location
Location NameUSA: Georgia
CoordinatesLat. (o)34.2611Long. (o)-83.95Alt. (m)Depth (m)2
Location on Map
Zoom:    Powered by OpenStreetMap ©

Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F017268Metagenome / Metatranscriptome241Y
F038565Metagenome / Metatranscriptome165Y
F039478Metagenome / Metatranscriptome163Y
F043788Metagenome / Metatranscriptome155Y
F050171Metagenome / Metatranscriptome145Y
F071967Metagenome / Metatranscriptome121Y

Sequences

Protein IDFamilyRBSSequence
Ga0214921_1000035517F039478N/AMLKKILEFIDGVFEEEKEQPVLGTLYKIKGEALPFRYIRFTNEVYSNKRVYHFKHHQLKEYKFNNLSKVERKANKEEVRIYNLIKDHVNEVAENN
Ga0214921_1000035521F071967N/AVSNQSEALAICSEFAEEYGIDSKDNNKIIVYMKSEYINELKNMLENKNYKLKSFQVYGDEAIVYFVPNKRR
Ga0214921_1000035523F017268N/AVNLDITLLFNLILGALSFLGGWLFTRVFSLFDKQESLMKEINDKTFSDFITLRKEMEAEGRKHQQEISDLALKISTTYVTKESFDDYFDRIEKKLDRNFDIIQQHLINKK
Ga0214921_1000035566F038565N/AVTNKKKFNFPPALLKQIDECSFGGYILFNFSNKGEPQVYTKFDNQINAMALLYYLNTWGQSIDQLNLEATTDLIARKNEEEDSEEQD
Ga0214921_100003557F050171N/AMGMFNYIKVEQDLPLNDELKALNIDFKKEEFQTKELEESLMSTYIIRDYRLFELKITSHWEDNPDYVKDGSRFGEFFNKNKLVEDSREEVFRDDYTGTFTFGAYISGKTKESYDYFPDWKCVVVQGLLREISLIKPIEKNSSGQRIEAQESFMKEIEDHERKMKCPVYSFYFKYYVKTMNLIEWKLSIGIVKIINFLNWLQWKAIRKAIRFLSPR
Ga0214921_1000035573F043788GAGGMASLDDIYDIIQKLENGGIEYLLITVQKGKKQGKADVFFNLKDKASMKILATGLAAFNKEIDNIDRQDEDEDDE

 ⦗Top⦘



© Pavlopoulos Lab, Bioinformatics & Integrative Biology | B.S.R.C. "Alexander Fleming" | Privacy Notice
Make sure JavaScript is enabled in your browser settings to achieve functionality.