Basic Information | |
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Taxon OID | 3300023174 Open in IMG/M |
Scaffold ID | Ga0214921_10000355 Open in IMG/M |
Source Dataset Name | Freshwater microbial communities from Lake Lanier, Atlanta, Georgia, United States - LL-1505 |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | DOE Joint Genome Institute (JGI) |
Sequencing Status | Permanent Draft |
Scaffold Components | |
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Scaffold Length (bps) | 87239 |
Total Scaffold Genes | 101 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 28 (27.72%) |
Novel Protein Genes | 6 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 1 (16.67%) |
Associated Families | 6 |
Taxonomy | |
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Not Available | (Source: ) |
Source Dataset Ecosystem |
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Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Lanier, Atlanta, Georgia, United States |
Source Dataset Sampling Location | ||||||||
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Location Name | USA: Georgia | |||||||
Coordinates | Lat. (o) | 34.2611 | Long. (o) | -83.95 | Alt. (m) | Depth (m) | 2 | Location on Map |
Zoom: | Powered by OpenStreetMap © |
Family | Category | Number of Sequences | 3D Structure? |
---|---|---|---|
F017268 | Metagenome / Metatranscriptome | 241 | Y |
F038565 | Metagenome / Metatranscriptome | 165 | Y |
F039478 | Metagenome / Metatranscriptome | 163 | Y |
F043788 | Metagenome / Metatranscriptome | 155 | Y |
F050171 | Metagenome / Metatranscriptome | 145 | Y |
F071967 | Metagenome / Metatranscriptome | 121 | Y |
Protein ID | Family | RBS | Sequence |
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Ga0214921_1000035517 | F039478 | N/A | MLKKILEFIDGVFEEEKEQPVLGTLYKIKGEALPFRYIRFTNEVYSNKRVYHFKHHQLKEYKFNNLSKVERKANKEEVRIYNLIKDHVNEVAENN |
Ga0214921_1000035521 | F071967 | N/A | VSNQSEALAICSEFAEEYGIDSKDNNKIIVYMKSEYINELKNMLENKNYKLKSFQVYGDEAIVYFVPNKRR |
Ga0214921_1000035523 | F017268 | N/A | VNLDITLLFNLILGALSFLGGWLFTRVFSLFDKQESLMKEINDKTFSDFITLRKEMEAEGRKHQQEISDLALKISTTYVTKESFDDYFDRIEKKLDRNFDIIQQHLINKK |
Ga0214921_1000035566 | F038565 | N/A | VTNKKKFNFPPALLKQIDECSFGGYILFNFSNKGEPQVYTKFDNQINAMALLYYLNTWGQSIDQLNLEATTDLIARKNEEEDSEEQD |
Ga0214921_100003557 | F050171 | N/A | MGMFNYIKVEQDLPLNDELKALNIDFKKEEFQTKELEESLMSTYIIRDYRLFELKITSHWEDNPDYVKDGSRFGEFFNKNKLVEDSREEVFRDDYTGTFTFGAYISGKTKESYDYFPDWKCVVVQGLLREISLIKPIEKNSSGQRIEAQESFMKEIEDHERKMKCPVYSFYFKYYVKTMNLIEWKLSIGIVKIINFLNWLQWKAIRKAIRFLSPR |
Ga0214921_1000035573 | F043788 | GAGG | MASLDDIYDIIQKLENGGIEYLLITVQKGKKQGKADVFFNLKDKASMKILATGLAAFNKEIDNIDRQDEDEDDE |
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