Scaffold Ga0214921_10000317

Overview

Basic Information

• Taxon OID: 3300023174
• Scaffold ID: Ga0214921_10000317
• Source Dataset Name: Freshwater microbial communities from Lake Lanier, Atlanta, Georgia, United States - LL-1505
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 95124
• Total Scaffold Genes: 143
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 121 (84.62%)
• Novel Protein Genes: 8
• Novel Protein Genes with Ribosome Binding Sites (RBS): 8 (100.00%)
• Associated Families: 8

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Lanier, Atlanta, Georgia, United States

Source Dataset Sampling Location

• Location Name: USA: Georgia
• Coordinates
  • Lat. (^o): 34.2611
  • Long. (^o): -83.95
  • Depth (m): 2

Associated Families

Family	Category	Number of Sequences	3D Structure?
F003439	Metagenome / Metatranscriptome	486	Y
F006979	Metagenome / Metatranscriptome	360	Y
F009065	Metagenome / Metatranscriptome	323	Y
F019636	Metagenome / Metatranscriptome	228	Y
F021093	Metagenome / Metatranscriptome	220	Y
F032163	Metagenome / Metatranscriptome	180	Y
F062705	Metagenome / Metatranscriptome	130	Y
F070899	Metagenome / Metatranscriptome	122	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0214921_10000317128	F006979	GAG	MSKVIKAAGEKHTVKKNKKGDVVVDHAGNKGKYDKINLTKKAGAKTIKQGVKATKDWHKKNG
Ga0214921_1000031719	F003439	AGGA	MTVNNSRSESASLIEGTTDGKYRKRRPNTEVAPGMGDQLVVKNRAGLHPYMNYGFINSEETAKVSPGAN
Ga0214921_1000031720	F070899	AGG	MKNDPGLFTDATGEGMAGAEDVKLETQRTLGTVYNGSTNCKACGMMLNPVQSLHAELCSSCSRRNLTRLVKNRMAE
Ga0214921_1000031721	F019636	GGTGG	MGNFLFADGVYGRRPWTPGGIVPEEAAYPPQAYIGPFASNQERLLSQSLASLMMSAAEVQEYVRPPLPQIKLFPARYGFTESEIGIEDIIDLPRTAPTAQRVESDFSNTPNTTQSTSRNTLGQV
Ga0214921_1000031741	F032163	GGA	MSEDFIDSILSDLDEYYPNSKRKRKVSVPKKPEIEPDLSWDAKPTKKTLPNGNEVELFSIGALAAALGRPVITIRTWIKEGYLPASPYRLPTKKNINGEDHQGRRLYSRAMVESTIELFRSAGVLHTKRVEWSLHRQLSNKIAEAWNDIRATENKTN
Ga0214921_1000031752	F062705	GGA	MKERNMSDTSNRLVQVFLSQAQTPGPGIFEVTADDPGNLFCTCPGFRGRHTCKHTKFVQARIDSNKGNYPLEISSRATRDDALKAKESNDNFREFVIKFGKIEVY
Ga0214921_1000031767	F021093	AGGAGG	MGNPFIVAEDLALKTLLAGITVADEKSGSRQVKIWFGYPDVEVRAQEFPFITIDLIDVIPANERQTSGYMWDDDNQGTTSPLGGRYGYDIPVAYDLSYQITSYARHPRHDRAIMYALFNKFPSKFGKLAVPNQIGTETAYRSMFLDGFVKRDAVDGETGNRRLLRNVLTVRVVSEMSPLQASATPIVEEAILDTIPTNPSDFYIV
Ga0214921_1000031790	F009065	GGA	MNLFKRRREIWIKPFSEKVSNRVAKIPTMELEQWIDQSLYEIGRCMSMYGKQRDSTFLKEALVGAEALHAVVDELARRTIRE