Scaffold Ga0214921_10000312

Overview

Basic Information

• Taxon OID: 3300023174
• Scaffold ID: Ga0214921_10000312
• Source Dataset Name: Freshwater microbial communities from Lake Lanier, Atlanta, Georgia, United States - LL-1505
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 95736
• Total Scaffold Genes: 117
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 74 (63.25%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 5 (100.00%)
• Associated Families: 5

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Lanier, Atlanta, Georgia, United States

Source Dataset Sampling Location

• Location Name: USA: Georgia
• Coordinates
  • Lat. (^o): 34.2611
  • Long. (^o): -83.95
  • Depth (m): 2

Associated Families

Family	Category	Number of Sequences	3D Structure?
F011825	Metagenome	286	Y
F023584	Metagenome	209	Y
F038982	Metagenome	164	Y
F043765	Metagenome	155	Y
F079586	Metagenome	115	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0214921_10000312115	F023584	AGG	MMQTNTQPKTPEPKPGSKRPNETGSISVEGFVKIFDPKTREIFVEKRA
Ga0214921_1000031249	F011825	AGG	MTVEQQKKPPVERYYYSEDEWARLGCGPLPPERDRARQLENVMAKGNPRIDGKNIKGYN
Ga0214921_1000031260	F079586	AGGAG	MSVRIESRSSEIDTERCVEHAGGRYDLVIAAAQRLREMKRRARETNSWVTPIDALKEVQSGTFNMTDYLVKVK
Ga0214921_1000031266	F038982	AGGA	MSKMSDFLKKAADKKKGIHHIENEDAPVVERKTAKQRAPVIGKKPPTRSAGRGR
Ga0214921_1000031278	F043765	GGA	MNYYYELDERTQKANLEQWHLWCMPNCSPAEGGRMCFKTHDDFMSNSRRVWLENANGVYLVKPHWGIYRGRVDDREFIMIKLRARTIKWWEDE