Scaffold Ga0214921_10000086

Overview

Basic Information

• Taxon OID: 3300023174
• Scaffold ID: Ga0214921_10000086
• Source Dataset Name: Freshwater microbial communities from Lake Lanier, Atlanta, Georgia, United States - LL-1505
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 170986
• Total Scaffold Genes: 288
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 190 (65.97%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (75.00%)
• Associated Families: 4

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Lanier, Atlanta, Georgia, United States

Source Dataset Sampling Location

• Location Name: USA: Georgia
• Coordinates
  • Lat. (^o): 34.2611
  • Long. (^o): -83.95
  • Depth (m): 2

Associated Families

Family	Category	Number of Sequences	3D Structure?
F011584	Metagenome / Metatranscriptome	289	Y
F016150	Metagenome / Metatranscriptome	249	Y
F078376	Metagenome / Metatranscriptome	116	Y
F096869	Metagenome / Metatranscriptome	104	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0214921_10000086161	F016150	AGG	MTEEKKSKNPFINMANEAKKNNNELHPGLGKAPKKQGPKANTKGFGGASVVRRAGRGG
Ga0214921_10000086184	F078376	AGGA	MAKKKVKIELYAEAPYMQGYASGLANEEFFNPYANVENAEADAEDYERGYENAVESVQDIHE
Ga0214921_1000008629	F011584	N/A	MLEYFITFFAVFFTDIFYTYYLKAVQEEQVMKASLWAVVVFIIACIAVINYTTNYWLLIPAGIGAFCGTYVGMILRKKE
Ga0214921_1000008657	F096869	AGGA	MMQDFYFEKTRNSVDDDWPESFYLDDLAKALNVERVSYRVYYSKDNLTCRLFVFRAHCTPTEMKTMLVMGFVFAQDGDTENIPDKPVEEEIEE