Scaffold Ga0214921_10000063

Overview

Basic Information

• Taxon OID: 3300023174
• Scaffold ID: Ga0214921_10000063
• Source Dataset Name: Freshwater microbial communities from Lake Lanier, Atlanta, Georgia, United States - LL-1505
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 190131
• Total Scaffold Genes: 283
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 202 (71.38%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (100.00%)
• Associated Families: 2

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → Caudovirales → Myoviridae (Source: IMG-VR)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Lanier, Atlanta, Georgia, United States

Source Dataset Sampling Location

• Location Name: USA: Georgia
• Coordinates
  • Lat. (^o): 34.2611
  • Long. (^o): -83.95
  • Depth (m): 2

Associated Families

Family	Category	Number of Sequences	3D Structure?
F073062	Metagenome / Metatranscriptome	120	N
F078376	Metagenome / Metatranscriptome	116	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0214921_10000063106	F073062	GAGG	MPAKIYKFPERRTYYRGYKIPLYNEEEIFLTIVALNLFGNVLEKVTEKNLESYEPMEVIKALVEAKSCSIFSHKTKQTIASILKSIEAL
Ga0214921_1000006381	F078376	GGAG	MANKRVKIELYAEAPYMQGYASGLATEQFFNPYADVENAEADAEDYERGYENAKDVEKNDTKY