Scaffold Ga0233432_10011359

Overview

Basic Information

• Taxon OID: 3300023109
• Scaffold ID: Ga0233432_10011359
• Source Dataset Name: Seawater microbial communities from Saanich Inlet, British Columbia, Canada - SI_122_August2016_10_MG
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Restricted
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Note: The use of this dataset is restricted, as per the data usage policy of the Joint Genome Institute (JGI). Utilizing any of the sequences below requires obtaining a license from the dataset's corresponding author(s).

Scaffold Components

• Scaffold Length (bps): 7097
• Total Scaffold Genes: 19
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 18 (94.74%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (100.00%)
• Associated Families: 4

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Inlet → Unclassified → Seawater → Methane Metabolizing Microbial Communities From Different Methane-Rich Environments From Various Locations

Source Dataset Sampling Location

• Location Name: Canada: British Columbia
• Coordinates
  • Lat. (^o): 48.5847
  • Long. (^o): -123.5008
  • Depth (m): 10

Associated Families

Family	Category	Number of Sequences	3D Structure?
F005352	Metagenome / Metatranscriptome	403	Y
F005796	Metagenome / Metatranscriptome	390	Y
F047922	Metagenome / Metatranscriptome	149	Y
F084734	Metagenome / Metatranscriptome	112	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0233432_1001135913	F084734	GGA	MKKYKRKPWTDVERKTLAAHYFYQDIESMMNMLPDRTEQSIRNQVAYLRKRGYRFKK
Ga0233432_1001135914	F005796	GGAG	MLEYAVFIFCMIGCGYTCYALGKQEGIETTIEHLVDEGMLEIDE
Ga0233432_100113597	F047922	GAGG	MTPQEIVDHKNKWKMANYFESHVHTDLRWDVVEWCKAHCFQWRYDIKRFTDVYADTVRFELEEDFTAFNEWYKDRGL
Ga0233432_100113598	F005352	GAGG	MIHPALDKPYIQLICNPYEHSTSVNTRITIDVMEKDLSRTEMLQVMESFMKAMGYGFTQNEVLCIEEYE