Scaffold Ga0224557_1047693

Overview

Basic Information

• Taxon OID: 3300023101
• Scaffold ID: Ga0224557_1047693
• Source Dataset Name: Peat soil microbial communities from Stordalen Mire, Sweden - 717 S3 10-14
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2008
• Total Scaffold Genes: 5
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 4 (80.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Peat → Unclassified → Unclassified → Soil → Peatland Microbial Communities From Stordalen Mire, Sweden

Source Dataset Sampling Location

• Location Name: Sweden: Norrbotten County, Stordalen Mire
• Coordinates
  • Lat. (^o): 68.3532
  • Long. (^o): 19.0475
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F039920	Metagenome	162	N
F044872	Metagenome	153	N
F062380	Metagenome	130	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0224557_10476931	F039920	N/A	SPQPNLNIVNRNAEFAMIDVQALDRTGRRQVLHGLLAQYNLGSESAKVALGMAHQNLPGFTALMERNVRLMRPGAAMEKTLQAVLARPAKPKFRRVAPEVNHNSVRCIGLDKLKF
Ga0224557_10476932	F044872	GGAGG	MNTGLLNSFASMVKGSILVTDAIKAAFSKFEGGIPSDDQVLVAISEVVFTVTLNKDARQVLSFYLIQLYANQLFISDPSSEFGVCMRIARREIDTLLSFSVLDRIAKYVWEHREQFLMLWTVYAENSAAHPESTSDILGATLTESIQLLEAA
Ga0224557_10476933	F062380	GAGG	MPSDFNDFECNDFEKLLFADPGSTGTCKLIIAYHPGFPLALGRIECASGLPIDVRVNVLESTPVLHTAELVFTGKTTDLCELQMRLTQWAAQFPHLPPMPEEALYARDNPSAPSGPPKGVDQSGV