Scaffold Ga0224558_1025954

Overview

Basic Information

• Taxon OID: 3300023090
• Scaffold ID: Ga0224558_1025954
• Source Dataset Name: Peat soil microbial communities from Stordalen Mire, Sweden - 717 S3 20-24
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2807
• Total Scaffold Genes: 6
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 3 (50.00%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium SCN 57-15 (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Peat → Unclassified → Unclassified → Soil → Peatland Microbial Communities From Stordalen Mire, Sweden

Source Dataset Sampling Location

• Location Name: Sweden: Norrbotten County, Stordalen Mire
• Coordinates
  • Lat. (^o): 68.3532
  • Long. (^o): 19.0475
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F038201	Metagenome / Metatranscriptome	166	N
F051827	Metagenome	143	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0224558_10259543	F051827	N/A	VKSQIYLVQNCGGVSLEVVGGPFDPEAAVEIEEAIIQRVKADSGLRHGGDDTLHTLEIAPDRKPEFSGFSGGYMENIRWVAAGCPPQGKPDTWDQPDFALTTKENAKEKHSLPILQPPKPVLP
Ga0224558_10259545	F038201	N/A	MKPGSRSATGPVRMDVFTRNVQFMAGQVAGEHAAQTFQMLQATFPGLRNFEQLRAFARLYVSTGLKPLQFRPLPSDVDPQRLKGELALRFHNGMIVLAPDERIVCRGADAYGPFDPVRAARFSRQLSAESPTNDDQGHTLDPEACAPTAVGMFPLDLS