Scaffold Ga0224558_1004333

Overview

Basic Information

• Taxon OID: 3300023090
• Scaffold ID: Ga0224558_1004333
• Source Dataset Name: Peat soil microbial communities from Stordalen Mire, Sweden - 717 S3 20-24
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 11100
• Total Scaffold Genes: 17
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 8 (47.06%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium SCN 57-15 (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Peat → Unclassified → Unclassified → Soil → Peatland Microbial Communities From Stordalen Mire, Sweden

Source Dataset Sampling Location

• Location Name: Sweden: Norrbotten County, Stordalen Mire
• Coordinates
  • Lat. (^o): 68.3532
  • Long. (^o): 19.0475
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F035367	Metagenome	172	Y
F046997	Metagenome	150	N
F063304	Metagenome	129	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0224558_10043331	F046997	AGGA	VFTTFAYRTLSLIGCSLALGAAASPVTVGDVRTERDSIPRALAQDKAEAIAIFRASQQPLLWLRAMSGISCIENKLQSTPTNAAAETSALLLTLGDNKLTLHADVLKKSYTACQPTNGLPLYVDRNRRRAPETYVDPEILKGGVNILTLKGTNQVPACLSGEALENYLQLRCDQKLQPGDYWRELHA
Ga0224558_10043333	F035367	GGCGG	MFILVLNAVLCGFFGLGIAVLHFLWLEYATVRWPKVRYTDDYQTSFALACAAVVFVLTTLRQIKTRLESKSLLPGEIGFILIFAAIVMVGLTPVPGSNFPQYLYEMNYPGKKDTSKEEPKSEEEAKPLKLNRDYP
Ga0224558_10043334	F063304	N/A	MRLNNSTPDRDVSPHIYNLLDQRLAQQGAPLHQLIRTYAAAVPAQPASPEELLNQLTAVLGKWAADPAQRVKPETVLAEEHLRLMDDISKIQGPEGASRLEATLVRVVANQFARNMGSALRIPDESKLICLSDVKPANAYSAFAQRTALIGIQPHEWVKRWVTSQRDLFRNKPSDAGYLRLAQRLSGAWPLEPGKDAFQRALGSFLDGIAASTNQSHAVVVQSSLLETFARAIRHQARDLGLDRPAVPPPAMSIC