Scaffold Ga0224558_1003922

Overview

Basic Information

• Taxon OID: 3300023090
• Scaffold ID: Ga0224558_1003922
• Source Dataset Name: Peat soil microbial communities from Stordalen Mire, Sweden - 717 S3 20-24
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 11977
• Total Scaffold Genes: 16
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 13 (81.25%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Peat → Unclassified → Unclassified → Soil → Peatland Microbial Communities From Stordalen Mire, Sweden

Source Dataset Sampling Location

• Location Name: Sweden: Norrbotten County, Stordalen Mire
• Coordinates
  • Lat. (^o): 68.3532
  • Long. (^o): 19.0475
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001596	Metagenome / Metatranscriptome	666	Y
F006278	Metagenome / Metatranscriptome	377	Y
F062069	Metagenome / Metatranscriptome	131	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0224558_100392212	F001596	AGGAG	MSRFHSITEAVDARNHASPAEIVACFQDQRNVLSRLAFLITGDQAAAEQAVVHACEMTIQGNSPFRDWLFEWAKAATIASAISHGTEAIRICEAAYKDRRCPHAEHLSQDDAEERAASLDLILAADAQTLIAELDPLCRAVLVLRVAIRSSIQDCALRLNVSRAAVLAANCHAMTWRQNGHAKPVEENHNASHAV
Ga0224558_100392213	F006278	GAGG	MFRAEIRWLASGPTLKLEGKLVADWAEQARCLVTTDVLPKGLVVDLTEVSYIDSVGEQLLKWLASVGALFVAGNVYAIAVCDRLGLSPMQRISERRKRRHGNNEEGYSIRHSRPVEAV
Ga0224558_10039225	F062069	AGG	MTEDGTSIHVRIDDEGYTHITVIQWDENGREIVYREDETFQCSEPQF