Scaffold Ga0224558_1003410

Overview

Basic Information

• Taxon OID: 3300023090
• Scaffold ID: Ga0224558_1003410
• Source Dataset Name: Peat soil microbial communities from Stordalen Mire, Sweden - 717 S3 20-24
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 13271
• Total Scaffold Genes: 21
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 17 (80.95%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (33.33%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Peat → Unclassified → Unclassified → Soil → Peatland Microbial Communities From Stordalen Mire, Sweden

Source Dataset Sampling Location

• Location Name: Sweden: Norrbotten County, Stordalen Mire
• Coordinates
  • Lat. (^o): 68.3532
  • Long. (^o): 19.0475
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F011360	Metagenome / Metatranscriptome	291	Y
F020937	Metagenome / Metatranscriptome	221	Y
F037387	Metagenome / Metatranscriptome	168	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0224558_100341016	F011360	N/A	MTTYGEWIKKSARIGALLGGVAGFFYGAYIMATNLTLGWTDVLDTMGSVATVLIFAVILGSLCIGIGGLAGMVLGVVASPLSSLHFRRSRYFSG
Ga0224558_10034106	F037387	GGAG	MGISNPEIQKKVFGPRWEHEIEKQRWPFWKRLMHRLQDCPICKPKSQTRKLQ
Ga0224558_10034108	F020937	N/A	MKTYAHELAHHYEHRKNVISFSSASLFQSLITASVIGVVAAFIGVALNAVRWYGNTSWYVGATVAAVVEAVVVTALVTIVIEQRRKRSIRRTLELAFLNHHIRNAITQMSMVQYVTDPQQHERLVREAVGRISEALFRIANSADLTGLSVEVDLKGIQLTHEGEAREQEEKKKVS