Scaffold Ga0224558_1002426

Overview

Basic Information

• Taxon OID: 3300023090
• Scaffold ID: Ga0224558_1002426
• Source Dataset Name: Peat soil microbial communities from Stordalen Mire, Sweden - 717 S3 20-24
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 17114
• Total Scaffold Genes: 21
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 17 (80.95%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (75.00%)
• Associated Families: 4

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Peat → Unclassified → Unclassified → Soil → Peatland Microbial Communities From Stordalen Mire, Sweden

Source Dataset Sampling Location

• Location Name: Sweden: Norrbotten County, Stordalen Mire
• Coordinates
  • Lat. (^o): 68.3532
  • Long. (^o): 19.0475
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001010	Metagenome / Metatranscriptome	807	Y
F002004	Metagenome / Metatranscriptome	605	Y
F028635	Metagenome / Metatranscriptome	191	Y
F076301	Metagenome	118	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0224558_100242614	F002004	GGA	MGQIPNSSRRLDEHISRALNKIRKPSTAAEITELLNRDLEPEDRPFQTKEVAEWLRNTGDTALTLYWSRTRPRR
Ga0224558_100242615	F001010	N/A	VKWLNLAALYNIGDMAVTIEMQNTGDPRARGEIVVVIEHVLSDRSGEWRVSLVGSRANEDWEMKVEGPNGFERSYTLMGSAGEHEPVAIGKLLVKLLPASKS
Ga0224558_10024262	F028635	GGTGG	MARAGRILLWWDREADQAGRPIRADVRLAGHEIWKQACRRTQALLDDHGPAAELMENTVAQVSRYLDRIGAPECSQKHALLMVAFSRRLRRYATKLNRLALVGGSGELSSRTLGEGWIAQANARLELARMVRKLSDKNGTVLMLRAAGYEWKDVAQILGKSPAAIRNSFWREIERIRCGTPPV
Ga0224558_10024263	F076301	GGAGG	MMTDPAFPIKNEVQRLVEVQIDTLRKPSQLTSSELDEYHLRSERITTLYKRLDLIARERFHSRSETTA