NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0224558_1000609

Scaffold Ga0224558_1000609


Overview

Basic Information
Taxon OID3300023090 Open in IMG/M
Scaffold IDGa0224558_1000609 Open in IMG/M
Source Dataset NamePeat soil microbial communities from Stordalen Mire, Sweden - 717 S3 20-24
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)41614
Total Scaffold Genes33 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)24 (72.73%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Peat → Unclassified → Unclassified → Soil → Peatland Microbial Communities From Stordalen Mire, Sweden

Source Dataset Sampling Location
Location NameSweden: Norrbotten County, Stordalen Mire
CoordinatesLat. (o)68.3532Long. (o)19.0475Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F058932Metagenome / Metatranscriptome134Y
F060308Metagenome133Y

Sequences

Protein IDFamilyRBSSequence
Ga0224558_100060922F060308N/AVYLADQRYLRWSDSGATIMAVKKQSAGFRRRKLSAVVRKAITSYYTDQEQLEIEKAAKQQKISKSSFVASAALKEARRIAH
Ga0224558_10006099F058932GAGMRIAFVSGQNQWWRKQRLAAKYLKMRLEGLIYPDVYCLPLMLSENCDFLLEDEKLPAGKYDLVLAELGSSESQLRYLESLVEAGEPPVAVIPGPPAILSRDLTDAKLRRVKRILCGARHVWAYSPELKTFCDGLIGRERAMIIPWPYDLAATRKLGRNSGRDFGQHRILVQAPMSFHDIVQNHPFVLKGVLFDVWRELPSALREKLAFHTFVYNSTDLERYTSSEFDKGLPFVLEGKRSYRSFVRFLGECDGVINLTAGSILGRITFLAAALGRPGIFSDNSQLNARLYPGSGVAMFDTVRLRELVGAMLRGLAEGTIDARLLPSSSAAAEIGDFQANQARLREILAASPCP
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