Scaffold Ga0224558

Basic Information
Taxon OID	3300023090 Open in IMG/M
Scaffold ID	Ga0224558_1000009 Open in IMG/M
Source Dataset Name	Peat soil microbial communities from Stordalen Mire, Sweden - 717 S3 20-24
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300023090 Open in IMG/M

Scaffold ID

Ga0224558_1000009 Open in IMG/M

Source Dataset Name

Peat soil microbial communities from Stordalen Mire, Sweden - 717 S3 20-24

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	256276
Total Scaffold Genes	214 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	143 (66.82%)
Novel Protein Genes	3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	2 (66.67%)
Associated Families	3

Scaffold Components

Scaffold Length (bps)

256276

Total Scaffold Genes

214 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

143 (66.82%)

Novel Protein Genes

3 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

2 (66.67%)

Associated Families

Taxonomy
All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	(Source: IMG/M)

Taxonomy

All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae

(Source: IMG/M)

Source Dataset Ecosystem
Environmental → Terrestrial → Peat → Unclassified → Unclassified → Soil → Peatland Microbial Communities From Stordalen Mire, Sweden

Source Dataset Ecosystem

Environmental → Terrestrial → Peat → Unclassified → Unclassified → Soil → Peatland Microbial Communities From Stordalen Mire, Sweden

Source Dataset Sampling Location
Location Name	Sweden: Norrbotten County, Stordalen Mire
Coordinates	Lat. (^o)	68.3532	Long. (^o)	19.0475	Alt. (m)	Depth (m)	0
Location on Map

Zoom:	Powered by OpenStreetMap^©

Source Dataset Sampling Location

Location Name

Sweden: Norrbotten County, Stordalen Mire

Coordinates

Lat. (^o)

68.3532

Long. (^o)

19.0475

Alt. (m)

Depth (m)

Location on Map

Zoom:

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000833	Metagenome / Metatranscriptome	871	Y
F046142	Metagenome / Metatranscriptome	151	Y
F058932	Metagenome / Metatranscriptome	134	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0224558_100000912	F046142	AGGAGG	MKYSSFPVVALLAFTMAFTGCKKQEQCASGDTPEVCKGVQECFKSGTAVEVCREGERDAMKMTTSPSATTSGAADALKYDSSKPAQKPTPKQPPKQ
Ga0224558_1000009130	F058932	GGAG	VSGLRIGFVTGQRAWWRRQRLNAKYVKMRLEGVIYPDVYCLALMLADKFDFVGEEERVGRGKYDLMLAELQGSDSQLRYLETLVEAGDPPVAVIPGPPAILSRDLTDEKLGRVKRILSGARHVWAYAPELKTFCDGLIGRERAVVIPWPYDFEATRKLGGAALPGQHKILVQVPMCFGDIVVNHPFVVKGVLADVFGELPASVRERITFHTFVYNDTDREKYGATRFAEGLPFVLEGKRGYRAFVRLLGECDGVINLTAGSILGRVTFLAAALGRPGIFSDNSSLNLRLYPNSCVTIFDTVRLRELVREMMGGLENGCETRLLPAQEAAREVGDFGRNREKLREICNL
Ga0224558_1000009163	F000833	N/A	MRCATCLLLACWIPAQMLADEPTSAMLYTTGSAWVNGSEVPKSAAIFVGDMLQTRSDSSASIQANGSSVMVMADSLVKFEGPAIEIEHGGVRVTTSQSLAAHAGDVTITPKASSWTEFQVVEADGVVQIIASKGDVTVQDPQGTTTVAQGGQTTRDETTGPEKKKKKKKGGAYGGTGSIMSSPWVLYGGLAGAGGGITWVLLQHSPPASPACRTDPCQ

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0224558_1000009

Overview

Ecosystem & Geography

Associated Families

Sequences