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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |
| Basic Information | |
|---|---|
| Taxon OID | 3300023088 Open in IMG/M |
| Scaffold ID | Ga0224555_1012300 Open in IMG/M |
| Source Dataset Name | Peat soil microbial communities from Stordalen Mire, Sweden - 717 S2 30-34 |
| Source Dataset Category | Metagenome |
| Source Dataset Use Policy | Open |
| Sequencing Center | DOE Joint Genome Institute (JGI) |
| Sequencing Status | Permanent Draft |
| Scaffold Components | |
|---|---|
| Scaffold Length (bps) | 5034 |
| Total Scaffold Genes | 7 (view) |
| Total Scaffold Genes with Ribosome Binding Sites (RBS) | 4 (57.14%) |
| Novel Protein Genes | 3 (view) |
| Novel Protein Genes with Ribosome Binding Sites (RBS) | 2 (66.67%) |
| Associated Families | 3 |
| Taxonomy | |
|---|---|
| All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Verrucomicrobiae → Verrucomicrobiales | (Source: UniRef50) |
| Source Dataset Ecosystem |
|---|
| Environmental → Terrestrial → Peat → Unclassified → Unclassified → Soil → Peatland Microbial Communities From Stordalen Mire, Sweden |
| Source Dataset Sampling Location | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location Name | Sweden: Norrbotten County, Stordalen Mire | |||||||
| Coordinates | Lat. (o) | 68.3532 | Long. (o) | 19.0474 | Alt. (m) | Depth (m) | 0 | Location on Map |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F009138 | Metagenome / Metatranscriptome | 322 | N |
| F013515 | Metagenome / Metatranscriptome | 270 | N |
| F016695 | Metagenome / Metatranscriptome | 245 | Y |
| Protein ID | Family | RBS | Sequence |
|---|---|---|---|
| Ga0224555_10123002 | F016695 | N/A | MHHNQIITVLQEHGFAEGRLIANSKSGYCKRHRSHFVVFNAQVCNLRGRLLKQADLDLTLDGEKLTQAARVAGENFYVLYENDPSPFWKPGSIPMPRVLRDAVWWTRIHREDEDLFLPMNSGPLEKKRVRLRCSLGSWQNRPAYSVDLWENPEWKSRRNMLGPVVQLLGHPPRGFRPTDENEVFTAEISKTRGRPVRPMFYHRVGLLDYVWFSHGVAVPAILYEHTVRRLDSVRFTWHRDSAAIHLRQAGEVVGLFWPCHISAPEVLVNARRRLFRRFAKSTAPKGPSAAVTAVEQSSGIGKEL |
| Ga0224555_10123003 | F013515 | GAGG | MTAPGYPFSAREIFGDLRSRLAAQHRRPMSFERLAKMLGRSKSTTYNWFDIFHHPQVLGFLCLLERLPPAERQSFIEAHCRTYPTLDDPRLAHAPGKAAKLLELLDQKAGLTIITGGTDFSRAFVFTALAHAASRADGRLPAAAGIDLHRSNFFVPVESLIYIDGDLGLDHARRLTHKIWPRVLTSGVPRLFFNRVWSSVPEVREDLLRCAGFKHVVIAEEGALDVGDLTTRVSTPIHVLTLSTAKSVPEGILVNCHRVQRAKRPGN |
| Ga0224555_10123006 | F009138 | GAG | MPQNRIFERPECRRRSLSASLTDVTKTARQWDAVFAMRVHPELLGKYTAPNVADDDEGYYLVGALVQEIDAALDGRLQSRLVSYGKFLALDFTFLARRRRTSSEEVLNLRAVLGPCDGSHPFVCVVRQAPPF |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |