Scaffold Ga0224555_1006428

Overview

Basic Information

• Taxon OID: 3300023088
• Scaffold ID: Ga0224555_1006428
• Source Dataset Name: Peat soil microbial communities from Stordalen Mire, Sweden - 717 S2 30-34
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 9132
• Total Scaffold Genes: 11
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 9 (81.82%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (100.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Peat → Unclassified → Unclassified → Soil → Peatland Microbial Communities From Stordalen Mire, Sweden

Source Dataset Sampling Location

• Location Name: Sweden: Norrbotten County, Stordalen Mire
• Coordinates
  • Lat. (^o): 68.3532
  • Long. (^o): 19.0474
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F019075	Metagenome	231	Y
F082025	Metagenome	113	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0224555_100642810	F082025	AGGAGG	MDSNTIFTSLFGGCLKAADKAAAAAINYSKSTAVPGVRKLSRKATLATGRTLVYVGSKLTDCCTDK
Ga0224555_100642811	F019075	AGGAGG	VRYFQPERALLAREIREERRRELDVVLSQLPHRVPAPSPLSLEAQFHRIIVNLREDVQRAKDVQTTHILRWLRS