Scaffold Ga0224555_1000435

Overview

Basic Information

• Taxon OID: 3300023088
• Scaffold ID: Ga0224555_1000435
• Source Dataset Name: Peat soil microbial communities from Stordalen Mire, Sweden - 717 S2 30-34
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 63402
• Total Scaffold Genes: 58
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 54 (93.10%)
• Novel Protein Genes: 6
• Novel Protein Genes with Ribosome Binding Sites (RBS): 6 (100.00%)
• Associated Families: 6

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Peat → Unclassified → Unclassified → Soil → Peatland Microbial Communities From Stordalen Mire, Sweden

Source Dataset Sampling Location

• Location Name: Sweden: Norrbotten County, Stordalen Mire
• Coordinates
  • Lat. (^o): 68.3532
  • Long. (^o): 19.0474
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F003389	Metagenome	489	Y
F003764	Metagenome	469	Y
F003942	Metagenome	460	N
F004301	Metagenome / Metatranscriptome	444	Y
F017951	Metagenome / Metatranscriptome	237	N
F063259	Metagenome / Metatranscriptome	129	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0224555_100043511	F003764	GAG	MQIQEDSTYVLDENPAALLAGAEIEAAALHRCLKIVRLWRQSSALSQSRHDEMIEEEQRIANLYAATLLEIGCAFGVETADELKVRIEAACILDSWECPPAEQGFLFPILSESANAASPARARK
Ga0224555_100043512	F004301	GGAG	MTAMQFSLFNAQPQVATVDTQPSVNARNAKRQLDTLRSQLATAQADLEDVDYNLSVVTMHQRASREGKIDANWWEGAMRFGMLDLDEEPAYRLGSYPVKVMRWIRHLIFSLHAERRDVQSGIAELESKVAALSQIVGDAIK
Ga0224555_100043513	F017951	GGA	MAIAHKFETAGLGTAPFRLVRVEMRWFSIPGIPGSKKPGSSCMYCGHPIAECCFLHDANGKEFHVGNECIKKAGDAGLYDTVKKELRRMKSQAEADLAAATFREGRDILARHEIHASLSTQPHPNSYFAAKGKTMADYYEFLLHNSPRGSVANLVSKLRDIATEPMQ
Ga0224555_100043556	F063259	AGGAGG	MHHITLSSLVVFSTICLLYALVVLAILRFCKVAKLKPNPPKSSTVRVEVTISAPAPAGAYPGKSEGPCITTTFVFADELARSVMDFLAGYNSPSRSDLLEFLQQTGGLIAGLSITHQDDNRVRSLTLLGQDAETVLSYLTHCFNCQLAGGTNELQDEHVSLTA
Ga0224555_10004358	F003389	AGG	MQITVWSVAADDDNGTYASVHETELAAYRRLIELTVDSDDKDQVAKAGAFIEAEDFDGLDEWIHEEVIEPLNTYSVDQHKLDVPAASDPAPTVENKPITRRELASLLHGLRLMQEQWEPQMHGCTSIGLHDPLELSEPNSCDHFCDEEDSPLSPTEIDDLCERLNMRLCN
Ga0224555_10004359	F003942	GGAG	MLGRRLNPTIHRYENVELIEVHSEYLECSFLVAKDEWESGKTLLNLFSPLDGNVLGFPHYRLHRDNISAAGPKLPDGTTAQPGMAEAIELQRHAGHALYADHLSAMLYGTGPKPARS