Scaffold Ga0224520_1033638

Overview

Basic Information

• Taxon OID: 3300023075
• Scaffold ID: Ga0224520_1033638
• Source Dataset Name: Peat soil microbial communities from Stordalen Mire, Sweden - C.F.S.T-25
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1216
• Total Scaffold Genes: 3
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Novel Protein Genes: 1
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (100.00%)
• Associated Families: 1

Taxonomy: All Organisms → cellular organisms → Archaea → TACK group → Candidatus Bathyarchaeota → unclassified Candidatus Bathyarchaeota → Candidatus Bathyarchaeota archaeon (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Peat → Unclassified → Unclassified → Soil → Peatland Microbial Communities From Stordalen Mire, Sweden

Source Dataset Sampling Location

• Location Name: Sweden: Norrbotten County, Stordalen Mire
• Coordinates
  • Lat. (^o): 68.3533
  • Long. (^o): 19.0466
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F060564	Metagenome	132	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0224520_10336382	F060564	GGA	MPMSTFNITPEQLVIFHECLGSKVCIRIFQVFLANRSLNVSAVSRKVGCNNDRCIEHLKKLAKLGIVQEEFYAGRHSFALKKGDFTDLMQQAIILMDKDEKSTPNIVHRGDSQ