Basic Information | |
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Taxon OID | 3300023068 Open in IMG/M |
Scaffold ID | Ga0224554_1005217 Open in IMG/M |
Source Dataset Name | Peat soil microbial communities from Stordalen Mire, Sweden - 717 S2 20-24 |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | DOE Joint Genome Institute (JGI) |
Sequencing Status | Permanent Draft |
Scaffold Components | |
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Scaffold Length (bps) | 5314 |
Total Scaffold Genes | 10 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 8 (80.00%) |
Novel Protein Genes | 3 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 2 (66.67%) |
Associated Families | 3 |
Taxonomy | |
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All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales | (Source: UniRef50) |
Source Dataset Ecosystem |
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Environmental → Terrestrial → Peat → Unclassified → Unclassified → Soil → Peatland Microbial Communities From Stordalen Mire, Sweden |
Source Dataset Sampling Location | ||||||||
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Location Name | Sweden: Norrbotten County, Stordalen Mire | |||||||
Coordinates | Lat. (o) | 68.3532 | Long. (o) | 19.0474 | Alt. (m) | Depth (m) | 0 | Location on Map |
Zoom: | Powered by OpenStreetMap © |
Family | Category | Number of Sequences | 3D Structure? |
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F009261 | Metagenome | 320 | Y |
F012316 | Metagenome | 281 | Y |
F093078 | Metagenome | 106 | N |
Protein ID | Family | RBS | Sequence |
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Ga0224554_10052171 | F012316 | N/A | VWEGLRSLGTRGISTVNLWRRHQDQNALERSLARIIETANGHRAKGLPKGAPAYVVLRDKADARIQVFAMKWGVDIAIIKAQAPALADLDSLCVPDKQIPAGLKLLAALLGMIVSLVLLGAASGLVHAGHDWVMRFVGR |
Ga0224554_10052173 | F009261 | AGGAGG | MILTPSNTGNLFAGAGLGIFAWSAFLKADKIPWLKNLLTTRRKEMTLDWIDKNKGISLLGLETINLGIHGILSANAVIFALGNTLLNIFMLWAYLPFRKMRTKQKHAHNVLKGVA |
Ga0224554_10052175 | F093078 | AGGAG | MKLIFGFLLFVAAVAITGGLYLVIRKPAQKKTDLEKLESACRQIVHRIRQLDDYLARIYTTAFFRMIPSSRKERSNVSEKQSSGSDFPHDSGVIPAE |
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