Scaffold Ga0224554_1000288

Overview

Basic Information

• Taxon OID: 3300023068
• Scaffold ID: Ga0224554_1000288
• Source Dataset Name: Peat soil microbial communities from Stordalen Mire, Sweden - 717 S2 20-24
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 44342
• Total Scaffold Genes: 44
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 40 (90.91%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Peat → Unclassified → Unclassified → Soil → Peatland Microbial Communities From Stordalen Mire, Sweden

Source Dataset Sampling Location

• Location Name: Sweden: Norrbotten County, Stordalen Mire
• Coordinates
  • Lat. (^o): 68.3532
  • Long. (^o): 19.0474
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001847	Metagenome / Metatranscriptome	626	Y
F012940	Metagenome	275	N
F060524	Metagenome	132	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0224554_100028812	F060524	GAGG	MAEISILRPKRSLISIPVNEAVYCESCACVSNSVGGCCGLCGNISVWPLAEFVPQPPTSPSPGAVSAGRSIPSWYGWLARAA
Ga0224554_100028834	F001847	N/A	MNLSRDQQIETLLAALKAALENENRWMEISADFSTDPERMEQWSSTAKLRRLEVERIEALLAGAPEPTSLAQPVRSETVEAKNRMGETA
Ga0224554_10002884	F012940	AGGAGG	MPDIGPISAARAAIVPTFSKQFILRFAILLLLTSADADVILTFAPSVFSALFNAPILRAAFAILILGLIASLARMWFLTFRDRL