Scaffold Ga0136601_1000883

Overview

Basic Information

• Taxon OID: 3300023049
• Scaffold ID: Ga0136601_1000883
• Source Dataset Name: Saline lake microbial communities from Rauer Islands, Antarctica - Metagenome Filla 2 #699
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 11112
• Total Scaffold Genes: 22
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 3 (13.64%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 2

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Non-Marine Saline And Alkaline → Saline → Unclassified → Saline Lake → Saline Lake Microbial Communities From Various Lakes In Antarctica

Source Dataset Sampling Location

• Location Name: Antarctica: Rauer Islands
• Coordinates
  • Lat. (^o): -68.5558
  • Long. (^o): 78.1913

Associated Families

Family	Category	Number of Sequences	3D Structure?
F063229	Metagenome	129	N
F096360	Metagenome	104	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0136601_100088313	F096360	N/A	MSRLSKIDKTELIKLASISSASQIAFKNNIRAEAVYEIYKKHNIQHLLKYSPRFIKAFHGKGGFSNEQICVELGITYERLYDVAASEKPPQCRFKKANEICKKIGYKGSIDYIDKNGVFEFKKNIKPQII
Ga0136601_100088314	F063229	N/A	MSKKQQINQHKIGILLSLLLDYTDEYKEVSIICEEVINDLYSEVPQLARTTYFQKVSSLIEEKVSNDLLMLGLLAIKSLVQVGANGKTALKLIKELEIMCNSQKQVYEMYHLDDCWNKLNTVMRKNYEKIIK