NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
x
This website uses cookies to improve user experience. By using NMPFamDB you consent to all cookies in accordance with our privacy policy. OK
Scaffold Ga0233427_10000849

Scaffold Ga0233427_10000849


Overview

Basic Information
Taxon OID3300022933 Open in IMG/M
Scaffold IDGa0233427_10000849 Open in IMG/M
Source Dataset NameSeawater microbial communities from Saanich Inlet, British Columbia, Canada - SI_118_April2016_100_MG
Source Dataset CategoryMetagenome
Source Dataset Use PolicyRestricted
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Note: The use of this dataset is restricted, as per the data usage policy of the Joint Genome Institute (JGI). Utilizing any of the sequences below requires obtaining a license from the dataset's corresponding author(s).


Scaffold Components
Scaffold Length (bps)36249
Total Scaffold Genes64 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)35 (54.69%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (25.00%)
Associated Families4

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Inlet → Unclassified → Seawater → Methane Metabolizing Microbial Communities From Different Methane-Rich Environments From Various Locations

Source Dataset Sampling Location
Location NameCanada: British Columbia
CoordinatesLat. (o)48.5847Long. (o)-123.5008Alt. (m)Depth (m)100
Location on Map
Zoom:    Powered by OpenStreetMap ©

Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F023365Metagenome210Y
F050009Metagenome146N
F072857Metagenome121N
F104049Metagenome101N

Sequences

Protein IDFamilyRBSSequence
Ga0233427_1000084914F023365N/AMGNLGEIAEIVNASELTLEVGSDNYILLTNLSLHIGRPEDRVATTDGGALFTYGKGDNYFTATLLVSGEELTKAVTTDSGSDEDETNSAGFNVLSQIDSNGDMQSIQWKIVAKNVSGATKTFAATGVLREYDISKPSEGKVSIDIFVRITGDDISISSS
Ga0233427_1000084923F072857N/AMAGNYYGINSCKDLLNIEVTDTVDDELLNRFGAVANQHIDNILKQHDERIPLKVPSILADVKMSANYYVCSLFRGKRGDNDTAKFWKDMFIDTINGIVEERSIEGLSYDVQRFNDRYRQEDVYRLW
Ga0233427_1000084952F104049N/AMPLNRDQKLYTEDQVWQFVTKAITRTLYDAIATHEAHGEHSIEVGWLRDYTDNIAITFPRIDPDE
Ga0233427_1000084963F050009GAGGMPRGKQSGIAYGQKKQYGQSDTAQLIAIASYLRKKYKVKVKREAYLIFNINNRLIKIKEYVTKADLNDCSVKNPDLLWIDKYGMWIVEVDGAVHDRKVEKTNQRNELFRSNNIKLIVVNLANCKELKLDIYEYINSEILRLIKNE
 ⦗Top⦘



Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
© Pavlopoulos Lab, Bioinformatics & Integrative Biology | B.S.R.C. "Alexander Fleming" | Privacy Notice
Make sure JavaScript is enabled in your browser settings to achieve functionality.