NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0255752_10367203

Scaffold Ga0255752_10367203


Overview

Basic Information
Taxon OID3300022929 Open in IMG/M
Scaffold IDGa0255752_10367203 Open in IMG/M
Source Dataset NameCoastal salt marsh microbial communities from the Groves Creek Marsh, Skidaway Island, Georgia - 011512CT metaG
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)580
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → Casjensviridae → unclassified Casjensviridae → Ruegeria phage vB_RpoS-V16(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Intertidal Zone → Salt Marsh → Salt Marsh → Coastal Salt Marsh Microbial Communities From The Groves Creek Marsh, Skidaway Island, Georgia

Source Dataset Sampling Location
Location NameUSA: Georgia
CoordinatesLat. (o)31.972Long. (o)-81.028Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000913Metagenome / Metatranscriptome838Y
F017163Metagenome / Metatranscriptome242Y

Sequences

Protein IDFamilyRBSSequence
Ga0255752_103672031F017163AGGAGMETITLELPDFWATALFYDDTSGFEYEDEKPFQDFCQWALKNYGTSEPVDKEEEGHFATYHDAKQFGVLACNVSTYTFLVGNGNPKTSAMTTLAHTMES
Ga0255752_103672032F000913N/AWEVEHNGEYLRIEWNEAATFNLQTPIQGQWVDYHCFTCYGIDSEQEALEHAMEVLEETE

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