Scaffold Ga0255783_10000427

Overview

Basic Information

• Taxon OID: 3300022923
• Scaffold ID: Ga0255783_10000427
• Source Dataset Name: Coastal salt marsh microbial communities from the Groves Creek Marsh, Skidaway Island, Georgia - 011507BT metaG
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 48745
• Total Scaffold Genes: 43
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 38 (88.37%)
• Novel Protein Genes: 1
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (100.00%)
• Associated Families: 1

Taxonomy: All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Alphaproteobacteria incertae sedis → SAR116 cluster → Candidatus Puniceispirillum → Candidatus Puniceispirillum marinum (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Intertidal Zone → Salt Marsh → Salt Marsh → Coastal Salt Marsh Microbial Communities From The Groves Creek Marsh, Skidaway Island, Georgia

Source Dataset Sampling Location

• Location Name: USA: Georgia
• Coordinates
  • Lat. (^o): 31.972
  • Long. (^o): -81.028
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F068899	Metagenome / Metatranscriptome	124	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0255783_100004271	F068899	AGG	MIGVMIGHGVMRLIGAMIDHGVMIGAMTGAKMAVHQRAVRQQGVRQPVQPAPASRLMASAVNHGHLPSGQTPIVVHSVTHLKDEIIGHGVMRPIDVMIGVMIGRGAMAFKNAMVLKNVIAGLKGVMMHLAATGLPAVTKSRDVMESRPLVRNRHAVKSLLAASPLSTNGLISVTSQQHRNPHLIAANLQTAPRQQHQNLAKSAHHAAAKAPPLKVVRAH