Scaffold Ga0247769_1029025

Overview

Basic Information

• Taxon OID: 3300022904
• Scaffold ID: Ga0247769_1029025
• Source Dataset Name: Plant litter microbial communities from Arlington Agricultural Research Station in Wisconsin, United States - UWRJ-L166-409R-6
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1568
• Total Scaffold Genes: 3
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 1 (33.33%)
• Novel Protein Genes: 1
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 1

Taxonomy: All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Nevskiales → Steroidobacteraceae → Steroidobacter → Steroidobacter agariperforans (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Plant Litter → Unclassified → Unclassified → Plant Litter → Soil Microbial Communities From Arlington Agricultural Research Station In Wisconsin And Kellogg Biological Station In Michigan, Replicating The Bioenergy Cropping Systems Trials (Bcsts)

Source Dataset Sampling Location

• Location Name: USA: Wisconsin
• Coordinates
  • Lat. (^o): 43.3
  • Long. (^o): -89.38
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F075019	Metagenome	119	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0247769_10290251	F075019	N/A	AGVKIIGILQARRDRGEPATIGKEEKQAILGSPLANDGLGIGSSATERRPSALTSSFGLVCLPRVNLDCAHRLIAAAASLDPNEPKLALLFARYETLLKQAHYVETPAPDPMTPWPPLGPIAELGRVRLAISFRSDPTAVFLEKASQELAFWRMTLREAQLLGTKMSALAAIRWANDFLSTLMRERQLDASDLTQLRGFIRPFTGEESDIGAAFLSESRTSLLGGMPSVAGDASWVVRLLLQKNATFNQEFRETIEPMRVRSSLDAREYYGYKAYAPLPREFHWAPDMFYNFGGKLALSRSPWDAHQFPSRVHDEDGRITLLLLQAEIEERPDLDVATLVRSSAHRNPYTGEPMEYDPRTQTLGFACLETASHPPEPGEQCKVALGQNAP