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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |
| Basic Information | |
|---|---|
| Taxon OID | 3300022902 Open in IMG/M |
| Scaffold ID | Ga0233429_1012331 Open in IMG/M |
| Source Dataset Name | Seawater microbial communities from Saanich Inlet, British Columbia, Canada - SI_118_April2016_135_MG |
| Source Dataset Category | Metagenome |
| Source Dataset Use Policy | Restricted |
| Sequencing Center | DOE Joint Genome Institute (JGI) |
| Sequencing Status | Permanent Draft |
Note: The use of this dataset is restricted, as per the data usage policy of the Joint Genome Institute (JGI). Utilizing any of the sequences below requires obtaining a license from the dataset's corresponding author(s).
| Scaffold Components | |
|---|---|
| Scaffold Length (bps) | 5660 |
| Total Scaffold Genes | 19 (view) |
| Total Scaffold Genes with Ribosome Binding Sites (RBS) | 18 (94.74%) |
| Novel Protein Genes | 5 (view) |
| Novel Protein Genes with Ribosome Binding Sites (RBS) | 5 (100.00%) |
| Associated Families | 5 |
| Taxonomy | |
|---|---|
| All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → unclassified Flavobacteriales → Flavobacteriales bacterium | (Source: UniRef50) |
| Source Dataset Ecosystem |
|---|
| Environmental → Aquatic → Marine → Inlet → Unclassified → Seawater → Methane Metabolizing Microbial Communities From Different Methane-Rich Environments From Various Locations |
| Source Dataset Sampling Location | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location Name | Canada: British Columbia | |||||||
| Coordinates | Lat. (o) | 48.5847 | Long. (o) | -123.5008 | Alt. (m) | Depth (m) | 135 | Location on Map |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F024106 | Metagenome | 207 | Y |
| F029745 | Metagenome | 187 | Y |
| F040056 | Metagenome / Metatranscriptome | 162 | Y |
| F077180 | Metagenome | 117 | Y |
| F081218 | Metagenome / Metatranscriptome | 114 | Y |
| Protein ID | Family | RBS | Sequence |
|---|---|---|---|
| Ga0233429_101233110 | F077180 | GAG | MKRGDLLRYEVDGSLWLVEWADDKWVKIVGVTHPLLIEETGLEIVSENR |
| Ga0233429_101233112 | F081218 | AGGA | MKVGDLVKWVGGSSHNLRGIVVDRCGHFEDLGPRGEAKVIWDTKGLGSLKQKPGGSWQTASNLKVISSLESEDENR |
| Ga0233429_101233117 | F029745 | AGGA | MASKAPRVGDVVKSRVTTESLAGFIVAKEGIHVWVRFFDTKFEDGDSWDVYTRRDTLEVLSRANAS |
| Ga0233429_101233118 | F040056 | GGAGG | VQTQADFRIGTLLRWHGDDQEGDDIDELGIVIQMPGETAYYYIAWGTTNTVSHHTPDMVEESLYQCQMEIVG |
| Ga0233429_10123319 | F024106 | GGA | MEESTFHSSFQVGDLITLKHHPGAPIAMVTSLDAIVFDRIMIQFFDTSRPEMAAPGHWKVVSRNETRRPAEV |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |