Scaffold Ga0247770_1003520

Overview

Basic Information

• Taxon OID: 3300022891
• Scaffold ID: Ga0247770_1003520
• Source Dataset Name: Plant litter microbial communities from Arlington Agricultural Research Station in Wisconsin, United States - UWRJ-L136-409B-6
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 5848
• Total Scaffold Genes: 10
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 8 (80.00%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 5 (100.00%)
• Associated Families: 1

Taxonomy: All Organisms → cellular organisms → Bacteria → Terrabacteria group → Cyanobacteria/Melainabacteria group → Cyanobacteria → Cyanophyceae (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Plant Litter → Unclassified → Unclassified → Plant Litter → Soil Microbial Communities From Arlington Agricultural Research Station In Wisconsin And Kellogg Biological Station In Michigan, Replicating The Bioenergy Cropping Systems Trials (Bcsts)

Source Dataset Sampling Location

• Location Name: USA: Wisconsin
• Coordinates
  • Lat. (^o): 43.3
  • Long. (^o): -89.38
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F048032	Metagenome / Metatranscriptome	148	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0247770_10035205	F048032	GGAGG	MDNKKQSQKQPKTLPLAQLAIVTLTEKDMSSVNGGFAWAG
Ga0247770_10035206	F048032	GGAGG	MDTKKQDQKQAKTLPLKNLPIVTLTEKDMSSVNGGGYNSWAG
Ga0247770_10035207	F048032	GGAGG	MDNKKPDQKPAKTLPLIKLPIVTLTEKDMSSVNGGRIGRPGGE
Ga0247770_10035208	F048032	GAGG	MDTKKQSQKPAKTLPVTQLPIVTMTEKDMSSVNGGATQSWAG
Ga0247770_10035209	F048032	GGAGG	MDNKKPDQKQAKILPLTKLPIVTLTDKDMSSVNGGTQRVWSG